Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 F11R-206ENST00000621309 4770 ntTSL 5 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 EMD-201ENST00000369835 966 ntTSL 3 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 AC106795.1-205ENST00000512851 1056 ntBASIC12.72□□□□□ -0.37
HLA-DMBP28068 CALM3-211ENST00000598871 561 ntTSL 4 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 AC104692.2-201ENST00000603054 253 ntBASIC12.72□□□□□ -0.37
HLA-DMBP28068 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HLA-DMBP28068 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC12.72□□□□□ -0.37
HLA-DMBP28068 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 MYB-201ENST00000316528 3571 ntTSL 5 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 MYB-241ENST00000616088 3573 ntTSL 5 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 PRYP5-201ENST00000451909 266 ntBASIC12.71□□□□□ -0.37
HLA-DMBP28068 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 HLA-J-202ENST00000469281 1241 ntBASIC12.71□□□□□ -0.37
HLA-DMBP28068 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 AF238378.1-201ENST00000526806 358 ntBASIC12.71□□□□□ -0.37
HLA-DMBP28068 AP002469.2-201ENST00000531724 424 ntBASIC12.71□□□□□ -0.37
HLA-DMBP28068 SART3-203ENST00000546611 1184 ntBASIC12.71□□□□□ -0.37
HLA-DMBP28068 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 IRF8-202ENST00000562492 946 ntTSL 3 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HLA-DMBP28068 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC12.71□□□□□ -0.37
HLA-DMBP28068 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DMBP28068 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC12.71□□□□□ -0.38
HLA-DMBP28068 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DMBP28068 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DMBP28068 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DMBP28068 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
HLA-DMBP28068 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC12.71□□□□□ -0.38
HLA-DMBP28068 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC12.71□□□□□ -0.38
HLA-DMBP28068 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC12.71□□□□□ -0.38
HLA-DMBP28068 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.38
HLA-DMBP28068 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
HLA-DMBP28068 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC12.7□□□□□ -0.38
HLA-DMBP28068 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HLA-DMBP28068 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms