Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC12.93□□□□□ -0.34
CXCL1P09341 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CXCL1P09341 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC12.93□□□□□ -0.34
CXCL1P09341 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.93□□□□□ -0.34
CXCL1P09341 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC12.93□□□□□ -0.34
CXCL1P09341 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC12.93□□□□□ -0.34
CXCL1P09341 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CXCL1P09341 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC12.93□□□□□ -0.34
CXCL1P09341 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
CXCL1P09341 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
CXCL1P09341 SRP19-202ENST00000445150 833 ntTSL 2 BASIC12.93□□□□□ -0.34
CXCL1P09341 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
CXCL1P09341 AP002490.2-201ENST00000524791 560 ntBASIC12.93□□□□□ -0.34
CXCL1P09341 CD99P1-205ENST00000527459 561 ntBASIC12.93□□□□□ -0.34
CXCL1P09341 EGLN1P1-201ENST00000531623 762 ntBASIC12.93□□□□□ -0.34
CXCL1P09341 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC12.93□□□□□ -0.34
CXCL1P09341 AP003071.4-201ENST00000562276 1284 ntBASIC12.93□□□□□ -0.34
CXCL1P09341 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC12.93□□□□□ -0.34
CXCL1P09341 AC024563.2-201ENST00000603282 481 ntBASIC12.93□□□□□ -0.34
CXCL1P09341 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC12.93□□□□□ -0.34
CXCL1P09341 ITM2C-210ENST00000620962 501 ntBASIC12.93□□□□□ -0.34
CXCL1P09341 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC12.93□□□□□ -0.34
CXCL1P09341 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC12.93□□□□□ -0.34
CXCL1P09341 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
CXCL1P09341 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CXCL1P09341 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CXCL1P09341 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CXCL1P09341 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CXCL1P09341 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC12.93□□□□□ -0.34
CXCL1P09341 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC12.92□□□□□ -0.34
CXCL1P09341 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC12.92□□□□□ -0.34
CXCL1P09341 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC12.92□□□□□ -0.34
CXCL1P09341 AC112504.1-201ENST00000623415 1841 ntBASIC12.92□□□□□ -0.34
CXCL1P09341 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
CXCL1P09341 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC12.92□□□□□ -0.34
CXCL1P09341 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC12.92□□□□□ -0.34
CXCL1P09341 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 AC009947.2-201ENST00000444014 672 ntBASIC12.92□□□□□ -0.34
CXCL1P09341 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC12.92□□□□□ -0.34
CXCL1P09341 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC12.92□□□□□ -0.34
CXCL1P09341 AC128688.1-201ENST00000487626 519 ntBASIC12.92□□□□□ -0.34
CXCL1P09341 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC12.92□□□□□ -0.34
CXCL1P09341 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC12.92□□□□□ -0.34
CXCL1P09341 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms