Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.77■□□□□ 0.28
VIMP08670 AC098590.1-201ENST00000468126 897 ntBASIC16.77■□□□□ 0.28
VIMP08670 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
VIMP08670 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 GCSHP2-201ENST00000560971 527 ntBASIC16.77■□□□□ 0.28
VIMP08670 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.77■□□□□ 0.28
VIMP08670 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.28
VIMP08670 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
VIMP08670 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.77■□□□□ 0.28
VIMP08670 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.77■□□□□ 0.28
VIMP08670 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VIMP08670 AL009178.2-201ENST00000597278 2719 ntBASIC16.77■□□□□ 0.28
VIMP08670 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VIMP08670 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
VIMP08670 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VIMP08670 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VIMP08670 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.77■□□□□ 0.27
VIMP08670 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VIMP08670 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
VIMP08670 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
VIMP08670 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VIMP08670 AC002310.6-201ENST00000624451 1377 ntBASIC16.77■□□□□ 0.27
VIMP08670 AL021920.2-201ENST00000624828 1351 ntBASIC16.77■□□□□ 0.27
VIMP08670 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 SBF1P1-201ENST00000444527 5631 ntBASIC16.76■□□□□ 0.27
VIMP08670 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.76■□□□□ 0.27
VIMP08670 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.76■□□□□ 0.27
VIMP08670 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.76■□□□□ 0.27
VIMP08670 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.76■□□□□ 0.27
VIMP08670 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.76■□□□□ 0.27
VIMP08670 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.76■□□□□ 0.27
VIMP08670 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.76■□□□□ 0.27
VIMP08670 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
VIMP08670 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.76■□□□□ 0.27
VIMP08670 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.76■□□□□ 0.27
VIMP08670 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.76■□□□□ 0.27
VIMP08670 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 STK19B-204ENST00000512515 211 ntBASIC16.76■□□□□ 0.27
VIMP08670 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.76■□□□□ 0.27
VIMP08670 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.76■□□□□ 0.27
VIMP08670 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.76■□□□□ 0.27
VIMP08670 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
VIMP08670 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
VIMP08670 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 FAM45BP-202ENST00000592932 1624 ntBASIC16.76■□□□□ 0.27
VIMP08670 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.76■□□□□ 0.27
VIMP08670 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
VIMP08670 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.76■□□□□ 0.27
VIMP08670 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
VIMP08670 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.76■□□□□ 0.27
VIMP08670 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VIMP08670 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
VIMP08670 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
VIMP08670 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VIMP08670 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VIMP08670 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
VIMP08670 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.75■□□□□ 0.27
VIMP08670 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC16.75■□□□□ 0.27
VIMP08670 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC16.75■□□□□ 0.27
VIMP08670 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.75■□□□□ 0.27
VIMP08670 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.75■□□□□ 0.27
VIMP08670 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VIMP08670 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
VIMP08670 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
VIMP08670 AC103564.2-201ENST00000432853 1299 ntBASIC16.75■□□□□ 0.27
VIMP08670 RASA4DP-201ENST00000460726 1199 ntBASIC16.75■□□□□ 0.27
VIMP08670 AC008550.1-201ENST00000511500 884 ntBASIC16.75■□□□□ 0.27
VIMP08670 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.75■□□□□ 0.27
VIMP08670 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms