Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.48■□□□□ 0.71
HLA-DOAP06340 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DOAP06340 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DOAP06340 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
HLA-DOAP06340 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DOAP06340 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.48■□□□□ 0.71
HLA-DOAP06340 AC093724.1-201ENST00000448659 1027 ntBASIC19.48■□□□□ 0.71
HLA-DOAP06340 HLA-J-202ENST00000469281 1241 ntBASIC19.48■□□□□ 0.71
HLA-DOAP06340 LY6E-204ENST00000519546 971 ntTSL 2 BASIC19.48■□□□□ 0.71
HLA-DOAP06340 LITAF-210ENST00000571976 548 ntTSL 2 BASIC19.48■□□□□ 0.71
HLA-DOAP06340 LITAF-214ENST00000574703 486 ntTSL 2 BASIC19.48■□□□□ 0.71
HLA-DOAP06340 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC19.48■□□□□ 0.71
HLA-DOAP06340 RN7SL204P-201ENST00000582831 262 ntBASIC19.48■□□□□ 0.71
HLA-DOAP06340 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DOAP06340 AL031731.1-201ENST00000642131 2094 ntBASIC19.48■□□□□ 0.71
HLA-DOAP06340 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
HLA-DOAP06340 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HLA-DOAP06340 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DOAP06340 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DOAP06340 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DOAP06340 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HLA-DOAP06340 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DOAP06340 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
HLA-DOAP06340 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.47■□□□□ 0.71
HLA-DOAP06340 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC19.47■□□□□ 0.71
HLA-DOAP06340 MTND6P24-201ENST00000440466 518 ntBASIC19.47■□□□□ 0.71
HLA-DOAP06340 AC004890.2-204ENST00000481968 304 ntBASIC19.47■□□□□ 0.71
HLA-DOAP06340 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC19.47■□□□□ 0.71
HLA-DOAP06340 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC19.47■□□□□ 0.71
HLA-DOAP06340 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC19.47■□□□□ 0.71
HLA-DOAP06340 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC19.47■□□□□ 0.71
HLA-DOAP06340 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
HLA-DOAP06340 AL590560.3-201ENST00000623350 461 ntBASIC19.47■□□□□ 0.71
HLA-DOAP06340 HFE2-206ENST00000634927 506 ntTSL 4 BASIC19.47■□□□□ 0.71
HLA-DOAP06340 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.47■□□□□ 0.71
HLA-DOAP06340 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.47■□□□□ 0.71
HLA-DOAP06340 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DOAP06340 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DOAP06340 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DOAP06340 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DOAP06340 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DOAP06340 AC006538.1-201ENST00000567905 1585 ntBASIC19.46■□□□□ 0.71
HLA-DOAP06340 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DOAP06340 HNRNPA3P1-201ENST00000401429 1139 ntBASIC19.46■□□□□ 0.71
HLA-DOAP06340 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DOAP06340 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 HNRNPA3P5-201ENST00000455201 833 ntBASIC19.46■□□□□ 0.71
HLA-DOAP06340 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 YTHDF3-AS1-201ENST00000603538 718 ntBASIC19.46■□□□□ 0.71
HLA-DOAP06340 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DOAP06340 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DOAP06340 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DOAP06340 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
HLA-DOAP06340 CETN4P-206ENST00000642099 2168 ntBASIC19.46■□□□□ 0.71
HLA-DOAP06340 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.7
HLA-DOAP06340 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DOAP06340 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DOAP06340 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.45■□□□□ 0.7
HLA-DOAP06340 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DOAP06340 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DOAP06340 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
HLA-DOAP06340 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.45■□□□□ 0.7
HLA-DOAP06340 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.45■□□□□ 0.7
HLA-DOAP06340 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DOAP06340 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DOAP06340 AL603756.1-201ENST00000606511 2163 ntBASIC19.45■□□□□ 0.7
HLA-DOAP06340 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DOAP06340 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DOAP06340 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HLA-DOAP06340 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.45■□□□□ 0.7
HLA-DOAP06340 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms