Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC22.92■■□□□ 1.26
NPHP4O75161 AC007969.1-201ENST00000433675 447 ntBASIC22.92■■□□□ 1.26
NPHP4O75161 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC22.92■■□□□ 1.26
NPHP4O75161 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
NPHP4O75161 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
NPHP4O75161 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC22.92■■□□□ 1.26
NPHP4O75161 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC22.92■■□□□ 1.26
NPHP4O75161 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC22.92■■□□□ 1.26
NPHP4O75161 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC22.92■■□□□ 1.26
NPHP4O75161 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC22.92■■□□□ 1.26
NPHP4O75161 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC22.92■■□□□ 1.26
NPHP4O75161 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC22.92■■□□□ 1.26
NPHP4O75161 ABALON-201ENST00000629058 1903 ntBASIC22.92■■□□□ 1.26
NPHP4O75161 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC22.92■■□□□ 1.26
NPHP4O75161 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
NPHP4O75161 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC22.92■■□□□ 1.26
NPHP4O75161 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
NPHP4O75161 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
NPHP4O75161 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC22.92■■□□□ 1.26
NPHP4O75161 GRN-222ENST00000639447 1314 ntTSL 2 BASIC22.92■■□□□ 1.26
NPHP4O75161 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC22.92■■□□□ 1.26
NPHP4O75161 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
NPHP4O75161 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC22.92■■□□□ 1.26
NPHP4O75161 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
NPHP4O75161 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP4O75161 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC22.91■■□□□ 1.26
NPHP4O75161 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP4O75161 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC22.91■■□□□ 1.26
NPHP4O75161 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC22.91■■□□□ 1.26
NPHP4O75161 MPRIPP1-201ENST00000452433 1089 ntBASIC22.91■■□□□ 1.26
NPHP4O75161 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC22.91■■□□□ 1.26
NPHP4O75161 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC22.91■■□□□ 1.26
NPHP4O75161 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC22.91■■□□□ 1.26
NPHP4O75161 AC120045.2-201ENST00000567334 178 ntBASIC22.91■■□□□ 1.26
NPHP4O75161 AC009486.1-201ENST00000569860 813 ntBASIC22.91■■□□□ 1.26
NPHP4O75161 MIR4722-201ENST00000578292 60 ntBASIC22.91■■□□□ 1.26
NPHP4O75161 AC005695.3-201ENST00000614522 232 ntBASIC22.91■■□□□ 1.26
NPHP4O75161 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC22.91■■□□□ 1.26
NPHP4O75161 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC22.91■■□□□ 1.26
NPHP4O75161 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC22.91■■□□□ 1.26
NPHP4O75161 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
NPHP4O75161 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC22.91■■□□□ 1.26
NPHP4O75161 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
NPHP4O75161 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP4O75161 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP4O75161 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP4O75161 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP4O75161 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP4O75161 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP4O75161 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
NPHP4O75161 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
NPHP4O75161 PKIG-203ENST00000372887 769 ntTSL 3 BASIC22.91■■□□□ 1.26
NPHP4O75161 HINT2P1-201ENST00000419438 481 ntBASIC22.91■■□□□ 1.26
NPHP4O75161 AC134915.1-201ENST00000426461 574 ntBASIC22.91■■□□□ 1.26
NPHP4O75161 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC22.91■■□□□ 1.26
NPHP4O75161 SCARNA20.5-201ENST00000516991 142 ntBASIC22.91■■□□□ 1.26
NPHP4O75161 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC22.91■■□□□ 1.26
NPHP4O75161 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC22.91■■□□□ 1.26
NPHP4O75161 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC22.91■■□□□ 1.26
NPHP4O75161 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC22.91■■□□□ 1.26
NPHP4O75161 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC22.91■■□□□ 1.26
NPHP4O75161 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC22.91■■□□□ 1.26
NPHP4O75161 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP4O75161 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP4O75161 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC22.9■■□□□ 1.26
NPHP4O75161 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC22.9■■□□□ 1.26
NPHP4O75161 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP4O75161 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
NPHP4O75161 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP4O75161 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP4O75161 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP4O75161 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP4O75161 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC22.9■■□□□ 1.26
NPHP4O75161 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP4O75161 STX6-204ENST00000542060 4809 ntTSL 2 BASIC22.9■■□□□ 1.26
NPHP4O75161 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
NPHP4O75161 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP4O75161 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
NPHP4O75161 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
NPHP4O75161 NUS1P3-201ENST00000423502 862 ntBASIC22.9■■□□□ 1.26
NPHP4O75161 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC22.9■■□□□ 1.26
NPHP4O75161 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC22.9■■□□□ 1.26
NPHP4O75161 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC22.9■■□□□ 1.26
NPHP4O75161 AC091804.1-201ENST00000486888 567 ntBASIC22.9■■□□□ 1.26
NPHP4O75161 RPL8-205ENST00000527914 551 ntTSL 3 BASIC22.9■■□□□ 1.26
NPHP4O75161 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC22.9■■□□□ 1.26
NPHP4O75161 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC22.9■■□□□ 1.26
NPHP4O75161 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC22.9■■□□□ 1.26
NPHP4O75161 AC005252.2-201ENST00000624630 1141 ntBASIC22.9■■□□□ 1.26
NPHP4O75161 TNXA-203ENST00000507684 2038 ntBASIC22.89■■□□□ 1.26
NPHP4O75161 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC22.89■■□□□ 1.26
NPHP4O75161 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
NPHP4O75161 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
NPHP4O75161 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
NPHP4O75161 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC22.89■■□□□ 1.26
NPHP4O75161 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP4O75161 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP4O75161 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
NPHP4O75161 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC22.89■■□□□ 1.25
NPHP4O75161 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC22.89■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms