Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 AC113404.2-201ENST00000507884 177 ntBASIC23.05■■□□□ 1.28
MSH5O43196 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC23.05■■□□□ 1.28
MSH5O43196 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH5O43196 CARD8-214ENST00000520007 614 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH5O43196 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
MSH5O43196 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC23.05■■□□□ 1.28
MSH5O43196 AC005829.1-201ENST00000570002 483 ntBASIC23.05■■□□□ 1.28
MSH5O43196 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC23.05■■□□□ 1.28
MSH5O43196 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC23.05■■□□□ 1.28
MSH5O43196 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC23.05■■□□□ 1.28
MSH5O43196 AC013244.3-201ENST00000605614 388 ntBASIC23.05■■□□□ 1.28
MSH5O43196 AC022306.3-201ENST00000619930 550 ntBASIC23.05■■□□□ 1.28
MSH5O43196 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC23.05■■□□□ 1.28
MSH5O43196 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC23.05■■□□□ 1.28
MSH5O43196 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
MSH5O43196 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH5O43196 LINC00602-201ENST00000629776 2065 ntBASIC23.05■■□□□ 1.28
MSH5O43196 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH5O43196 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC23.05■■□□□ 1.28
MSH5O43196 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
MSH5O43196 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
MSH5O43196 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH5O43196 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH5O43196 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC23.04■■□□□ 1.28
MSH5O43196 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
MSH5O43196 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
MSH5O43196 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 PON3-203ENST00000427422 894 ntTSL 3 BASIC23.04■■□□□ 1.28
MSH5O43196 AC010086.1-201ENST00000437359 1052 ntBASIC23.04■■□□□ 1.28
MSH5O43196 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC23.04■■□□□ 1.28
MSH5O43196 AC008687.5-201ENST00000593746 558 ntBASIC23.04■■□□□ 1.28
MSH5O43196 AC140725.3-201ENST00000616193 880 ntBASIC23.04■■□□□ 1.28
MSH5O43196 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 AC105020.1-201ENST00000435356 2205 ntBASIC23.04■■□□□ 1.28
MSH5O43196 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC23.04■■□□□ 1.28
MSH5O43196 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
MSH5O43196 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC23.03■■□□□ 1.28
MSH5O43196 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
MSH5O43196 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 AC125634.1-201ENST00000438758 1403 ntBASIC23.03■■□□□ 1.28
MSH5O43196 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 RNU6-304P-201ENST00000364855 107 ntBASIC23.03■■□□□ 1.28
MSH5O43196 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC23.03■■□□□ 1.28
MSH5O43196 LYRM4-207ENST00000480566 941 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC23.03■■□□□ 1.28
MSH5O43196 RNU6-467P-201ENST00000517027 110 ntBASIC23.03■■□□□ 1.28
MSH5O43196 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC23.03■■□□□ 1.28
MSH5O43196 RNF151-202ENST00000569210 853 ntTSL 2 BASIC23.03■■□□□ 1.28
MSH5O43196 AC064836.3-201ENST00000607928 673 ntBASIC23.03■■□□□ 1.28
MSH5O43196 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC23.03■■□□□ 1.28
MSH5O43196 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC23.03■■□□□ 1.28
MSH5O43196 LINC01132-202ENST00000641214 1085 ntBASIC23.03■■□□□ 1.28
MSH5O43196 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC23.03■■□□□ 1.28
MSH5O43196 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
MSH5O43196 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
MSH5O43196 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC23.03■■□□□ 1.28
MSH5O43196 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC23.03■■□□□ 1.28
MSH5O43196 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
MSH5O43196 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 AC097374.2-201ENST00000618617 1306 ntBASIC23.03■■□□□ 1.28
MSH5O43196 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
MSH5O43196 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
MSH5O43196 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
MSH5O43196 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC23.02■■□□□ 1.28
MSH5O43196 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH5O43196 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
MSH5O43196 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH5O43196 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms