Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.15■□□□□ 0.5
CLDN3O15551 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.15■□□□□ 0.5
CLDN3O15551 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.15■□□□□ 0.5
CLDN3O15551 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.15■□□□□ 0.5
CLDN3O15551 AP000344.2-201ENST00000512987 629 ntBASIC18.15■□□□□ 0.5
CLDN3O15551 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.15■□□□□ 0.5
CLDN3O15551 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.15■□□□□ 0.5
CLDN3O15551 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.15■□□□□ 0.5
CLDN3O15551 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.15■□□□□ 0.5
CLDN3O15551 AL596442.2-201ENST00000610240 980 ntBASIC18.15■□□□□ 0.5
CLDN3O15551 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.15■□□□□ 0.5
CLDN3O15551 AL513210.1-201ENST00000629608 234 ntBASIC18.15■□□□□ 0.5
CLDN3O15551 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.15■□□□□ 0.5
CLDN3O15551 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.15■□□□□ 0.5
CLDN3O15551 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.15■□□□□ 0.5
CLDN3O15551 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CLDN3O15551 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.15■□□□□ 0.5
CLDN3O15551 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CLDN3O15551 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.15■□□□□ 0.5
CLDN3O15551 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
CLDN3O15551 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CLDN3O15551 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CLDN3O15551 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CLDN3O15551 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CLDN3O15551 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
CLDN3O15551 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.14■□□□□ 0.5
CLDN3O15551 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.14■□□□□ 0.49
CLDN3O15551 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.14■□□□□ 0.49
CLDN3O15551 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.14■□□□□ 0.49
CLDN3O15551 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CLDN3O15551 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.14■□□□□ 0.49
CLDN3O15551 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CLDN3O15551 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.14■□□□□ 0.49
CLDN3O15551 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.14■□□□□ 0.49
CLDN3O15551 KRT8P48-201ENST00000515599 1220 ntBASIC18.14■□□□□ 0.49
CLDN3O15551 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.14■□□□□ 0.49
CLDN3O15551 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CLDN3O15551 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CLDN3O15551 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.14■□□□□ 0.49
CLDN3O15551 AP001160.2-201ENST00000596071 487 ntBASIC18.14■□□□□ 0.49
CLDN3O15551 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.14■□□□□ 0.49
CLDN3O15551 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.14■□□□□ 0.49
CLDN3O15551 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
CLDN3O15551 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
CLDN3O15551 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLDN3O15551 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
CLDN3O15551 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CLDN3O15551 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN3O15551 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN3O15551 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN3O15551 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CLDN3O15551 CNN2P11-201ENST00000429351 262 ntBASIC18.13■□□□□ 0.49
CLDN3O15551 KRT18P34-201ENST00000488218 1270 ntBASIC18.13■□□□□ 0.49
CLDN3O15551 AC243562.1-201ENST00000560672 389 ntBASIC18.13■□□□□ 0.49
CLDN3O15551 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.13■□□□□ 0.49
CLDN3O15551 AC022145.2-201ENST00000598203 171 ntBASIC18.13■□□□□ 0.49
CLDN3O15551 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CLDN3O15551 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.13■□□□□ 0.49
CLDN3O15551 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.13■□□□□ 0.49
CLDN3O15551 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN3O15551 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN3O15551 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN3O15551 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN3O15551 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN3O15551 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLDN3O15551 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.13■□□□□ 0.49
CLDN3O15551 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms