Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 REXO1L8P-201ENST00000604378 1897 ntBASIC16.22■□□□□ 0.19
HDAC3O15379 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.22■□□□□ 0.19
HDAC3O15379 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
HDAC3O15379 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 NCF1C-201ENST00000438382 1427 ntBASIC16.22■□□□□ 0.19
HDAC3O15379 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
HDAC3O15379 AL031133.1-201ENST00000406807 723 ntBASIC16.22■□□□□ 0.19
HDAC3O15379 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.22■□□□□ 0.19
HDAC3O15379 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HDAC3O15379 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
HDAC3O15379 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
HDAC3O15379 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.22■□□□□ 0.19
HDAC3O15379 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.22■□□□□ 0.19
HDAC3O15379 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
HDAC3O15379 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC3O15379 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.21■□□□□ 0.19
HDAC3O15379 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.21■□□□□ 0.19
HDAC3O15379 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.21■□□□□ 0.19
HDAC3O15379 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 GPAA1P2-202ENST00000606848 1787 ntBASIC16.21■□□□□ 0.19
HDAC3O15379 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
HDAC3O15379 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.21■□□□□ 0.19
HDAC3O15379 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.21■□□□□ 0.19
HDAC3O15379 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.21■□□□□ 0.19
HDAC3O15379 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
HDAC3O15379 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HDAC3O15379 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.21■□□□□ 0.19
HDAC3O15379 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
HDAC3O15379 LINC00265-3P-201ENST00000447588 903 ntBASIC16.21■□□□□ 0.19
HDAC3O15379 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.21■□□□□ 0.19
HDAC3O15379 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.21■□□□□ 0.19
HDAC3O15379 AC074051.2-201ENST00000565115 352 ntBASIC16.21■□□□□ 0.19
HDAC3O15379 AP002414.4-201ENST00000589764 1148 ntBASIC16.21■□□□□ 0.19
HDAC3O15379 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.21■□□□□ 0.19
HDAC3O15379 AC092329.2-201ENST00000598402 547 ntBASIC16.21■□□□□ 0.19
HDAC3O15379 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.21■□□□□ 0.19
HDAC3O15379 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 CDC14C-201ENST00000428251 1719 ntBASIC16.21■□□□□ 0.19
HDAC3O15379 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HDAC3O15379 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
HDAC3O15379 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC3O15379 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HDAC3O15379 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.21■□□□□ 0.18
HDAC3O15379 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.2■□□□□ 0.18
HDAC3O15379 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HDAC3O15379 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
HDAC3O15379 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
HDAC3O15379 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HDAC3O15379 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.2■□□□□ 0.18
HDAC3O15379 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HDAC3O15379 AC112504.1-201ENST00000623415 1841 ntBASIC16.2■□□□□ 0.18
HDAC3O15379 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.2■□□□□ 0.18
HDAC3O15379 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 PAWRP1-201ENST00000451083 565 ntBASIC16.2■□□□□ 0.18
HDAC3O15379 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.2■□□□□ 0.18
HDAC3O15379 LINC02447-202ENST00000501888 2146 ntBASIC16.2■□□□□ 0.18
HDAC3O15379 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.2■□□□□ 0.18
HDAC3O15379 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.2■□□□□ 0.18
HDAC3O15379 RN7SL850P-201ENST00000579959 291 ntBASIC16.2■□□□□ 0.18
HDAC3O15379 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC3O15379 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
HDAC3O15379 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms