Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.77■□□□□ 0.27
TRIM38O00635 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
TRIM38O00635 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM38O00635 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.77■□□□□ 0.27
TRIM38O00635 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM38O00635 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.77■□□□□ 0.27
TRIM38O00635 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.77■□□□□ 0.27
TRIM38O00635 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
TRIM38O00635 LINC02199-201ENST00000506655 2702 ntBASIC16.76■□□□□ 0.27
TRIM38O00635 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
TRIM38O00635 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM38O00635 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
TRIM38O00635 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM38O00635 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
TRIM38O00635 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM38O00635 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM38O00635 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.76■□□□□ 0.27
TRIM38O00635 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.76■□□□□ 0.27
TRIM38O00635 AL513480.1-201ENST00000451731 511 ntBASIC16.76■□□□□ 0.27
TRIM38O00635 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM38O00635 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM38O00635 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.76■□□□□ 0.27
TRIM38O00635 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TRIM38O00635 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM38O00635 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
TRIM38O00635 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
TRIM38O00635 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM38O00635 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.76■□□□□ 0.27
TRIM38O00635 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.76■□□□□ 0.27
TRIM38O00635 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TRIM38O00635 LINC02012-201ENST00000608206 1725 ntBASIC16.76■□□□□ 0.27
TRIM38O00635 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRIM38O00635 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM38O00635 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM38O00635 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM38O00635 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM38O00635 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
TRIM38O00635 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM38O00635 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TRIM38O00635 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
TRIM38O00635 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM38O00635 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
TRIM38O00635 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
TRIM38O00635 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.75■□□□□ 0.27
TRIM38O00635 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
TRIM38O00635 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
TRIM38O00635 FAM8A3P-201ENST00000427218 844 ntBASIC16.75■□□□□ 0.27
TRIM38O00635 PAWRP1-201ENST00000451083 565 ntBASIC16.75■□□□□ 0.27
TRIM38O00635 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 AC004449.1-201ENST00000564240 433 ntBASIC16.75■□□□□ 0.27
TRIM38O00635 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 REXO1L3P-201ENST00000622202 1288 ntBASIC16.75■□□□□ 0.27
TRIM38O00635 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.75■□□□□ 0.27
TRIM38O00635 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 AC008741.2-201ENST00000612792 3115 ntBASIC16.75■□□□□ 0.27
TRIM38O00635 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
TRIM38O00635 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRIM38O00635 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
TRIM38O00635 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM38O00635 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM38O00635 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.74■□□□□ 0.27
TRIM38O00635 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.74■□□□□ 0.27
TRIM38O00635 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TRIM38O00635 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM38O00635 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM38O00635 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.74■□□□□ 0.27
TRIM38O00635 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms