Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.04■□□□□ 0.16
SLC28A1O00337 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SLC28A1O00337 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC28A1O00337 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SLC28A1O00337 AC006449.6-201ENST00000612330 2296 ntBASIC16.03■□□□□ 0.16
SLC28A1O00337 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.03■□□□□ 0.16
SLC28A1O00337 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SLC28A1O00337 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.03■□□□□ 0.16
SLC28A1O00337 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 AL365203.3-201ENST00000609742 2057 ntBASIC16.03■□□□□ 0.16
SLC28A1O00337 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.03■□□□□ 0.16
SLC28A1O00337 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SLC28A1O00337 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.03■□□□□ 0.16
SLC28A1O00337 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.03■□□□□ 0.16
SLC28A1O00337 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SLC28A1O00337 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
SLC28A1O00337 KRT18P27-201ENST00000427733 1299 ntBASIC16.03■□□□□ 0.16
SLC28A1O00337 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.03■□□□□ 0.16
SLC28A1O00337 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.03■□□□□ 0.16
SLC28A1O00337 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.03■□□□□ 0.16
SLC28A1O00337 OR7E14P-202ENST00000530490 1290 ntBASIC16.03■□□□□ 0.16
SLC28A1O00337 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.03■□□□□ 0.16
SLC28A1O00337 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.03■□□□□ 0.16
SLC28A1O00337 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.03■□□□□ 0.16
SLC28A1O00337 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.03■□□□□ 0.16
SLC28A1O00337 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.03■□□□□ 0.16
SLC28A1O00337 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.03■□□□□ 0.16
SLC28A1O00337 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.03■□□□□ 0.16
SLC28A1O00337 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.03■□□□□ 0.16
SLC28A1O00337 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
SLC28A1O00337 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.03■□□□□ 0.16
SLC28A1O00337 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC28A1O00337 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.02■□□□□ 0.16
SLC28A1O00337 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.02■□□□□ 0.16
SLC28A1O00337 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.02■□□□□ 0.16
SLC28A1O00337 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.02■□□□□ 0.16
SLC28A1O00337 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.02■□□□□ 0.16
SLC28A1O00337 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.02■□□□□ 0.16
SLC28A1O00337 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.02■□□□□ 0.16
SLC28A1O00337 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.02■□□□□ 0.16
SLC28A1O00337 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.02■□□□□ 0.16
SLC28A1O00337 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.02■□□□□ 0.16
SLC28A1O00337 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SLC28A1O00337 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.02■□□□□ 0.16
SLC28A1O00337 AC136632.2-201ENST00000512891 861 ntBASIC16.02■□□□□ 0.16
SLC28A1O00337 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
SLC28A1O00337 AC020765.3-201ENST00000613051 740 ntBASIC16.02■□□□□ 0.16
SLC28A1O00337 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SLC28A1O00337 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.02■□□□□ 0.15
SLC28A1O00337 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
SLC28A1O00337 AC007950.2-201ENST00000615045 2347 ntBASIC16.02■□□□□ 0.15
SLC28A1O00337 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.02■□□□□ 0.15
SLC28A1O00337 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SLC28A1O00337 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SLC28A1O00337 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
SLC28A1O00337 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SLC28A1O00337 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SLC28A1O00337 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.15
SLC28A1O00337 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SLC28A1O00337 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
SLC28A1O00337 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms