Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 DUSP5P1-201ENST00000441325 1139 ntBASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 LINC01711-201ENST00000598340 967 ntBASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.39■□□□□ 0.37
PCDHA3Q9Y5H8 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 OR7E14P-202ENST00000530490 1290 ntBASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 AC008667.4-201ENST00000607370 168 ntBASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHA3Q9Y5H8 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 AC010491.1-201ENST00000563101 2797 ntBASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 RPS2P1-201ENST00000434010 821 ntBASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 AC136632.2-201ENST00000512891 861 ntBASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 AC020765.3-201ENST00000613051 740 ntBASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHA3Q9Y5H8 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms