Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 TOP3BP1-201ENST00000420768 1380 ntBASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 HARS-203ENST00000431330 1774 ntTSL 2 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 SNX33P1-201ENST00000592116 1762 ntBASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 AC104076.2-201ENST00000448912 469 ntBASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 RBM42-202ENST00000586618 771 ntTSL 3 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 COPE-211ENST00000600932 1144 ntTSL 5 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 Z69720.1-201ENST00000601483 472 ntBASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 AL121672.3-201ENST00000608644 468 ntBASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 AL031731.1-201ENST00000642131 2094 ntBASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 AL512652.2-201ENST00000625156 1716 ntBASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 AC233702.3-201ENST00000578656 1387 ntBASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC11.62□□□□□ -0.55
UBE2D4Q9Y2X8 FES-204ENST00000414248 2327 ntTSL 2 BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 AL590787.1-201ENST00000568856 1315 ntBASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBE2D4Q9Y2X8 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms