Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 KRT18P32-201ENST00000424695 1287 ntBASIC16.7■□□□□ 0.26
LHX3Q9UBR4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 AC093724.1-201ENST00000448659 1027 ntBASIC16.7■□□□□ 0.26
LHX3Q9UBR4 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 AC023141.5-201ENST00000458585 616 ntBASIC16.7■□□□□ 0.26
LHX3Q9UBR4 AC092183.1-201ENST00000469884 875 ntBASIC16.7■□□□□ 0.26
LHX3Q9UBR4 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 AC105233.2-201ENST00000523697 349 ntBASIC16.7■□□□□ 0.26
LHX3Q9UBR4 AF228730.5-201ENST00000530288 346 ntBASIC16.7■□□□□ 0.26
LHX3Q9UBR4 SLC25A39P2-201ENST00000537614 270 ntBASIC16.7■□□□□ 0.26
LHX3Q9UBR4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 AC009093.7-201ENST00000623853 1223 ntBASIC16.7■□□□□ 0.26
LHX3Q9UBR4 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 AL139400.1-201ENST00000366220 510 ntBASIC16.69■□□□□ 0.26
LHX3Q9UBR4 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 GPS2P2-201ENST00000430745 888 ntBASIC16.69■□□□□ 0.26
LHX3Q9UBR4 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 LINC01144-201ENST00000626198 1710 ntBASIC16.69■□□□□ 0.26
LHX3Q9UBR4 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.69■□□□□ 0.26
LHX3Q9UBR4 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LHX3Q9UBR4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 AC005052.1-201ENST00000625181 2492 ntBASIC16.68■□□□□ 0.26
LHX3Q9UBR4 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LHX3Q9UBR4 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms