Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 AC236430.1-201ENST00000402231 743 ntBASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 TSPY16P-201ENST00000449843 468 ntBASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 ALG1L8P-201ENST00000533887 760 ntBASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 AC087641.1-201ENST00000557561 1021 ntBASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 MIR3909-201ENST00000579518 119 ntBASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 AC027307.2-201ENST00000591252 911 ntBASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 MIR6080-201ENST00000617359 66 ntBASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 AL390754.1-201ENST00000619088 582 ntBASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 AC008267.7-201ENST00000624570 1194 ntBASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
TM9SF3Q9HD45 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 AC002472.2-201ENST00000442739 958 ntBASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 UGT1A2P-201ENST00000454886 866 ntBASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 TERF1P3-201ENST00000505638 1227 ntBASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 AP000842.3-202ENST00000569238 1080 ntBASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 AP001350.2-201ENST00000625104 1094 ntBASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms