Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 AL365330.1-201ENST00000607459 531 ntBASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
KIAA1549Q9HCM3 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 AC138761.1-201ENST00000584393 385 ntBASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
KIAA1549Q9HCM3 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 CNN2P2-201ENST00000443536 909 ntBASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 CNN2P3-201ENST00000450201 906 ntBASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 IGHV3-62-201ENST00000520057 340 ntBASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 AL136317.3-201ENST00000618497 906 ntBASIC14.71□□□□□ -0.06
KIAA1549Q9HCM3 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 RNA5SP410-201ENST00000516285 106 ntBASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 AL512356.2-201ENST00000546955 174 ntBASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.7□□□□□ -0.06
KIAA1549Q9HCM3 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms