Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX2Q99626 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC17.1■□□□□ 0.33
CDX2Q99626 CLUHP6-201ENST00000580789 941 ntBASIC17.1■□□□□ 0.33
CDX2Q99626 AC104982.3-201ENST00000581995 514 ntBASIC17.1■□□□□ 0.33
CDX2Q99626 EEF1DP1-201ENST00000585891 896 ntBASIC17.1■□□□□ 0.33
CDX2Q99626 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.1■□□□□ 0.33
CDX2Q99626 LINC01115-203ENST00000606068 577 ntBASIC17.1■□□□□ 0.33
CDX2Q99626 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.1■□□□□ 0.33
CDX2Q99626 HLA-C-210ENST00000640219 976 ntBASIC17.1■□□□□ 0.33
CDX2Q99626 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX2Q99626 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 AL589702.1-201ENST00000641229 1509 ntBASIC17.1■□□□□ 0.33
CDX2Q99626 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CDX2Q99626 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX2Q99626 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CDX2Q99626 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX2Q99626 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CDX2Q99626 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 SLC25A24-204ENST00000569674 2357 ntBASIC17.09■□□□□ 0.33
CDX2Q99626 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX2Q99626 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC17.09■□□□□ 0.33
CDX2Q99626 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CDX2Q99626 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDX2Q99626 FO393414.2-201ENST00000405153 598 ntBASIC17.09■□□□□ 0.33
CDX2Q99626 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.09■□□□□ 0.33
CDX2Q99626 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC17.09■□□□□ 0.33
CDX2Q99626 C2orf27AP3-201ENST00000434123 579 ntBASIC17.09■□□□□ 0.33
CDX2Q99626 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.09■□□□□ 0.33
CDX2Q99626 FTLP10-202ENST00000505798 471 ntBASIC17.09■□□□□ 0.33
CDX2Q99626 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.09■□□□□ 0.33
CDX2Q99626 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX2Q99626 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX2Q99626 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.09■□□□□ 0.33
CDX2Q99626 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.09■□□□□ 0.33
CDX2Q99626 MIR4741-201ENST00000579822 90 ntBASIC17.09■□□□□ 0.33
CDX2Q99626 AP003419.4-201ENST00000616071 517 ntBASIC17.09■□□□□ 0.33
CDX2Q99626 AL354718.3-201ENST00000616414 581 ntBASIC17.09■□□□□ 0.33
CDX2Q99626 AC091812.3-201ENST00000621362 345 ntBASIC17.09■□□□□ 0.33
CDX2Q99626 CR382287.1-201ENST00000623954 586 ntBASIC17.09■□□□□ 0.33
CDX2Q99626 AHCYP2-201ENST00000430630 1300 ntBASIC17.09■□□□□ 0.33
CDX2Q99626 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CDX2Q99626 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.09■□□□□ 0.33
CDX2Q99626 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX2Q99626 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
CDX2Q99626 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDX2Q99626 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDX2Q99626 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDX2Q99626 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
CDX2Q99626 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.08■□□□□ 0.33
CDX2Q99626 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDX2Q99626 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.08■□□□□ 0.32
CDX2Q99626 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CDX2Q99626 KRT8P37-201ENST00000451609 1420 ntBASIC17.08■□□□□ 0.32
CDX2Q99626 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.08■□□□□ 0.32
CDX2Q99626 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC17.08■□□□□ 0.32
CDX2Q99626 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX2Q99626 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.08■□□□□ 0.32
CDX2Q99626 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX2Q99626 KRTAP10-13P-201ENST00000412914 571 ntBASIC17.08■□□□□ 0.32
CDX2Q99626 CNN2P8-201ENST00000421872 913 ntBASIC17.08■□□□□ 0.32
CDX2Q99626 RN7SL720P-201ENST00000488178 304 ntBASIC17.08■□□□□ 0.32
CDX2Q99626 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX2Q99626 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.08■□□□□ 0.32
CDX2Q99626 AC245884.6-201ENST00000515672 1067 ntBASIC17.08■□□□□ 0.32
CDX2Q99626 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.08■□□□□ 0.32
CDX2Q99626 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDX2Q99626 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC17.08■□□□□ 0.32
CDX2Q99626 KLK3-207ENST00000595952 969 ntTSL 3 BASIC17.08■□□□□ 0.32
CDX2Q99626 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
CDX2Q99626 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.08■□□□□ 0.32
CDX2Q99626 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX2Q99626 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX2Q99626 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX2Q99626 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX2Q99626 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX2Q99626 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX2Q99626 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDX2Q99626 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDX2Q99626 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX2Q99626 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDX2Q99626 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX2Q99626 AC093724.1-201ENST00000448659 1027 ntBASIC17.07■□□□□ 0.32
CDX2Q99626 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms