Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 AC091304.2-201ENST00000564639 760 ntBASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 AL805961.1-202ENST00000641562 540 ntBASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 AF228730.7-201ENST00000641842 219 ntBASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.28■□□□□ 0.36
ATG4AQ8WYN0 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 AC006449.6-201ENST00000612330 2296 ntBASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 AF238378.1-201ENST00000526806 358 ntBASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 PRELID1P1-202ENST00000567272 903 ntBASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 AC091167.2-201ENST00000579581 588 ntBASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 CYP2A7P1-201ENST00000595391 815 ntBASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.27■□□□□ 0.36
ATG4AQ8WYN0 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
ATG4AQ8WYN0 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ATG4AQ8WYN0 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ATG4AQ8WYN0 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
ATG4AQ8WYN0 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.27■□□□□ 0.35
ATG4AQ8WYN0 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
ATG4AQ8WYN0 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
ATG4AQ8WYN0 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.27■□□□□ 0.35
ATG4AQ8WYN0 REXO1L8P-201ENST00000604378 1897 ntBASIC17.27■□□□□ 0.35
ATG4AQ8WYN0 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 AL603832.2-201ENST00000566195 2125 ntBASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ATG4AQ8WYN0 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms