Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CASC4-202ENST00000345795 3764 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 METTL26-204ENST00000397665 558 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SYS1-203ENST00000414310 795 ntTSL 3 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AC009407.1-201ENST00000568958 598 ntBASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AC023141.13-201ENST00000604991 943 ntBASIC5.17□□□□□ -1.58
SYNE1Q8NF91 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 NMU-203ENST00000507338 658 ntTSL 3 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AC109462.3-201ENST00000573934 613 ntBASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 SPCS2P4-201ENST00000436160 681 ntBASIC5.17□□□□□ -1.58
SYNE1Q8NF91 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 AL845472.1-202ENST00000624675 4080 ntBASIC5.17□□□□□ -1.58
SYNE1Q8NF91 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SYNE1Q8NF91 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms