Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 AC133681.1-201ENST00000465482 601 ntBASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 AP002982.1-201ENST00000492365 877 ntBASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 AC233263.1-201ENST00000578059 224 ntBASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 AC124016.1-201ENST00000609552 612 ntBASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.96□□□□□ -0.17
CCDC28AQ8IWP9 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC28AQ8IWP9 AC027612.1-201ENST00000445234 2395 ntBASIC13.96□□□□□ -0.18
CCDC28AQ8IWP9 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.96□□□□□ -0.18
CCDC28AQ8IWP9 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
CCDC28AQ8IWP9 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC28AQ8IWP9 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC28AQ8IWP9 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC28AQ8IWP9 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.18
CCDC28AQ8IWP9 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC28AQ8IWP9 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC28AQ8IWP9 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC28AQ8IWP9 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC13.96□□□□□ -0.18
CCDC28AQ8IWP9 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 AC006504.5-208ENST00000588784 2401 ntBASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 MIR564-202ENST00000385049 94 ntBASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 AL353807.1-201ENST00000427475 662 ntBASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 AC131212.4-201ENST00000623606 975 ntBASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 KRT8P50-201ENST00000562022 1438 ntBASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
CCDC28AQ8IWP9 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 AC099521.3-201ENST00000624251 2938 ntBASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms