Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SH3RF1Q7Z6J0 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 TREML5P-201ENST00000421694 576 ntBASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 FAM86C2P-203ENST00000528684 1004 ntBASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 SLC25A39P2-201ENST00000537614 270 ntBASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 AP001059.3-201ENST00000619053 235 ntBASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 CYP51A1P2-201ENST00000419457 1499 ntBASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19■□□□□ 0.63
SH3RF1Q7Z6J0 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 AC107890.1-201ENST00000422478 521 ntBASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 SLC25A6P2-201ENST00000497974 877 ntBASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SH3RF1Q7Z6J0 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.98■□□□□ 0.63
SH3RF1Q7Z6J0 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms