Protein–RNA interactions for Protein: Q6P4E1

CASC4, Protein CASC4, humanhuman

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4Q6P4E1 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CASC4Q6P4E1 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CASC4Q6P4E1 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CASC4Q6P4E1 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CASC4Q6P4E1 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.03■□□□□ 0.32
CASC4Q6P4E1 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CASC4Q6P4E1 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CASC4Q6P4E1 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CASC4Q6P4E1 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
CASC4Q6P4E1 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CASC4Q6P4E1 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.03■□□□□ 0.32
CASC4Q6P4E1 AC026691.1-201ENST00000602502 2017 ntBASIC17.03■□□□□ 0.32
CASC4Q6P4E1 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 PTCHD3P3-201ENST00000403073 906 ntBASIC17.02■□□□□ 0.32
CASC4Q6P4E1 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 AC013467.2-201ENST00000605472 835 ntBASIC17.02■□□□□ 0.32
CASC4Q6P4E1 REXO1L6P-202ENST00000619970 1078 ntBASIC17.02■□□□□ 0.32
CASC4Q6P4E1 AC004706.3-202ENST00000621574 984 ntBASIC17.02■□□□□ 0.32
CASC4Q6P4E1 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.02■□□□□ 0.32
CASC4Q6P4E1 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.02■□□□□ 0.31
CASC4Q6P4E1 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CASC4Q6P4E1 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
CASC4Q6P4E1 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CASC4Q6P4E1 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
CASC4Q6P4E1 PCDHA1-201ENST00000378133 2726 ntBASIC17.02■□□□□ 0.31
CASC4Q6P4E1 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CASC4Q6P4E1 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.02■□□□□ 0.31
CASC4Q6P4E1 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.02■□□□□ 0.31
CASC4Q6P4E1 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CASC4Q6P4E1 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CASC4Q6P4E1 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 PAWRP1-201ENST00000451083 565 ntBASIC17.01■□□□□ 0.31
CASC4Q6P4E1 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.01■□□□□ 0.31
CASC4Q6P4E1 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CASC4Q6P4E1 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17■□□□□ 0.31
CASC4Q6P4E1 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CASC4Q6P4E1 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CASC4Q6P4E1 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17■□□□□ 0.31
CASC4Q6P4E1 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17■□□□□ 0.31
CASC4Q6P4E1 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17■□□□□ 0.31
CASC4Q6P4E1 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC17■□□□□ 0.31
CASC4Q6P4E1 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CASC4Q6P4E1 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17■□□□□ 0.31
CASC4Q6P4E1 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms