Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.28□□□□□ -0.12
ABCA4P78363 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC14.28□□□□□ -0.12
ABCA4P78363 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.28□□□□□ -0.12
ABCA4P78363 AC092068.3-201ENST00000587894 2016 ntBASIC14.28□□□□□ -0.12
ABCA4P78363 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
ABCA4P78363 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
ABCA4P78363 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.28□□□□□ -0.12
ABCA4P78363 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC14.28□□□□□ -0.12
ABCA4P78363 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 AC018529.1-201ENST00000613063 361 ntBASIC14.28□□□□□ -0.12
ABCA4P78363 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.28□□□□□ -0.12
ABCA4P78363 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
ABCA4P78363 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 AC093525.9-201ENST00000624961 1746 ntBASIC14.28□□□□□ -0.12
ABCA4P78363 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
ABCA4P78363 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC14.28□□□□□ -0.12
ABCA4P78363 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC14.28□□□□□ -0.12
ABCA4P78363 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.28□□□□□ -0.12
ABCA4P78363 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
ABCA4P78363 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
ABCA4P78363 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
ABCA4P78363 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
ABCA4P78363 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.27□□□□□ -0.12
ABCA4P78363 AL353705.2-201ENST00000428243 662 ntBASIC14.27□□□□□ -0.12
ABCA4P78363 AC009477.1-201ENST00000452936 217 ntBASIC14.27□□□□□ -0.12
ABCA4P78363 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.27□□□□□ -0.12
ABCA4P78363 AC003101.2-201ENST00000612557 442 ntBASIC14.27□□□□□ -0.12
ABCA4P78363 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
ABCA4P78363 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
ABCA4P78363 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
ABCA4P78363 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
ABCA4P78363 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
ABCA4P78363 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.27□□□□□ -0.12
ABCA4P78363 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
ABCA4P78363 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
ABCA4P78363 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
ABCA4P78363 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.27□□□□□ -0.12
ABCA4P78363 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
ABCA4P78363 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
ABCA4P78363 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
ABCA4P78363 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC14.27□□□□□ -0.12
ABCA4P78363 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
ABCA4P78363 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.27□□□□□ -0.13
ABCA4P78363 KRT17P7-201ENST00000451704 1104 ntBASIC14.27□□□□□ -0.13
ABCA4P78363 API5-211ENST00000534695 560 ntTSL 5 BASIC14.27□□□□□ -0.13
ABCA4P78363 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.27□□□□□ -0.13
ABCA4P78363 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.27□□□□□ -0.13
ABCA4P78363 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.27□□□□□ -0.13
ABCA4P78363 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC14.27□□□□□ -0.13
ABCA4P78363 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC14.27□□□□□ -0.13
ABCA4P78363 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC14.27□□□□□ -0.13
ABCA4P78363 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
ABCA4P78363 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC14.27□□□□□ -0.13
ABCA4P78363 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.13
ABCA4P78363 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
ABCA4P78363 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.27□□□□□ -0.13
ABCA4P78363 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
ABCA4P78363 AL353779.1-201ENST00000434793 351 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 MTND6P24-201ENST00000440466 518 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.26□□□□□ -0.13
ABCA4P78363 AC009407.1-201ENST00000568958 598 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 AC132938.2-201ENST00000579188 680 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 TEX28P1-201ENST00000613479 1221 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 TEX28P2-201ENST00000617764 1221 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 AL591163.1-201ENST00000641757 987 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
ABCA4P78363 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC14.26□□□□□ -0.13
ABCA4P78363 AC139713.2-201ENST00000641328 2723 ntBASIC14.26□□□□□ -0.13
ABCA4P78363 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC14.26□□□□□ -0.13
ABCA4P78363 BTBD7P1-201ENST00000447253 1453 ntBASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms