Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 AKAP8P1-201ENST00000434743 1349 ntBASIC18.3■□□□□ 0.52
PEX3P56589 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PEX3P56589 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PEX3P56589 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PEX3P56589 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PEX3P56589 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PEX3P56589 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.3■□□□□ 0.52
PEX3P56589 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PEX3P56589 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.3■□□□□ 0.52
PEX3P56589 KRT18P34-201ENST00000488218 1270 ntBASIC18.3■□□□□ 0.52
PEX3P56589 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.3■□□□□ 0.52
PEX3P56589 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.3■□□□□ 0.52
PEX3P56589 AC243562.1-201ENST00000560672 389 ntBASIC18.3■□□□□ 0.52
PEX3P56589 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.3■□□□□ 0.52
PEX3P56589 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.3■□□□□ 0.52
PEX3P56589 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.3■□□□□ 0.52
PEX3P56589 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.3■□□□□ 0.52
PEX3P56589 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.3■□□□□ 0.52
PEX3P56589 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.3■□□□□ 0.52
PEX3P56589 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.3■□□□□ 0.52
PEX3P56589 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PEX3P56589 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
PEX3P56589 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PEX3P56589 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PEX3P56589 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.3■□□□□ 0.52
PEX3P56589 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PEX3P56589 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PEX3P56589 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.3■□□□□ 0.52
PEX3P56589 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.3■□□□□ 0.52
PEX3P56589 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
PEX3P56589 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PEX3P56589 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.29■□□□□ 0.52
PEX3P56589 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.29■□□□□ 0.52
PEX3P56589 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.29■□□□□ 0.52
PEX3P56589 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.29■□□□□ 0.52
PEX3P56589 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.29■□□□□ 0.52
PEX3P56589 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.29■□□□□ 0.52
PEX3P56589 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.29■□□□□ 0.52
PEX3P56589 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.29■□□□□ 0.52
PEX3P56589 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
PEX3P56589 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.29■□□□□ 0.52
PEX3P56589 AP006288.1-201ENST00000446065 395 ntBASIC18.29■□□□□ 0.52
PEX3P56589 DNAJB3-202ENST00000449667 1266 ntBASIC18.29■□□□□ 0.52
PEX3P56589 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.29■□□□□ 0.52
PEX3P56589 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.29■□□□□ 0.52
PEX3P56589 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.29■□□□□ 0.52
PEX3P56589 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
PEX3P56589 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.29■□□□□ 0.52
PEX3P56589 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.29■□□□□ 0.52
PEX3P56589 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.29■□□□□ 0.52
PEX3P56589 AL596442.2-201ENST00000610240 980 ntBASIC18.29■□□□□ 0.52
PEX3P56589 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.29■□□□□ 0.52
PEX3P56589 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.29■□□□□ 0.52
PEX3P56589 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.29■□□□□ 0.52
PEX3P56589 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PEX3P56589 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PEX3P56589 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PEX3P56589 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
PEX3P56589 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PEX3P56589 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PEX3P56589 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
PEX3P56589 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PEX3P56589 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
PEX3P56589 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PEX3P56589 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.28■□□□□ 0.52
PEX3P56589 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PEX3P56589 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PEX3P56589 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PEX3P56589 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.28■□□□□ 0.52
PEX3P56589 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.28■□□□□ 0.52
PEX3P56589 AC079140.1-201ENST00000508039 487 ntBASIC18.28■□□□□ 0.52
PEX3P56589 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.28■□□□□ 0.52
PEX3P56589 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.28■□□□□ 0.52
PEX3P56589 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.28■□□□□ 0.52
PEX3P56589 AC022145.2-201ENST00000598203 171 ntBASIC18.28■□□□□ 0.52
PEX3P56589 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.28■□□□□ 0.52
PEX3P56589 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PEX3P56589 AL513210.1-201ENST00000629608 234 ntBASIC18.28■□□□□ 0.52
PEX3P56589 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.28■□□□□ 0.52
PEX3P56589 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PEX3P56589 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.28■□□□□ 0.52
PEX3P56589 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 651.5 ms