Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC046158.3-201ENST00000624947 2558 ntBASIC15.79■□□□□ 0.12
LIM2P55344 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.79■□□□□ 0.12
LIM2P55344 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.79■□□□□ 0.12
LIM2P55344 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.79■□□□□ 0.12
LIM2P55344 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.79■□□□□ 0.12
LIM2P55344 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.79■□□□□ 0.12
LIM2P55344 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.79■□□□□ 0.12
LIM2P55344 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.79■□□□□ 0.12
LIM2P55344 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.79■□□□□ 0.12
LIM2P55344 AL031055.1-201ENST00000606362 631 ntBASIC15.79■□□□□ 0.12
LIM2P55344 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
LIM2P55344 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.79■□□□□ 0.12
LIM2P55344 CICP6-201ENST00000457191 2729 ntBASIC15.79■□□□□ 0.12
LIM2P55344 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
LIM2P55344 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.78■□□□□ 0.12
LIM2P55344 AC026691.1-201ENST00000602502 2017 ntBASIC15.78■□□□□ 0.12
LIM2P55344 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
LIM2P55344 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.78■□□□□ 0.12
LIM2P55344 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.78■□□□□ 0.12
LIM2P55344 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 AC008741.2-201ENST00000612792 3115 ntBASIC15.78■□□□□ 0.12
LIM2P55344 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
LIM2P55344 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.78■□□□□ 0.12
LIM2P55344 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
LIM2P55344 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.78■□□□□ 0.12
LIM2P55344 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
LIM2P55344 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.78■□□□□ 0.12
LIM2P55344 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.78■□□□□ 0.12
LIM2P55344 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.78■□□□□ 0.12
LIM2P55344 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.78■□□□□ 0.12
LIM2P55344 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.78■□□□□ 0.12
LIM2P55344 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.78■□□□□ 0.12
LIM2P55344 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.78■□□□□ 0.12
LIM2P55344 AC068137.2-201ENST00000605408 478 ntBASIC15.78■□□□□ 0.12
LIM2P55344 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LIM2P55344 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.78■□□□□ 0.12
LIM2P55344 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 AC092919.2-201ENST00000623631 1645 ntBASIC15.78■□□□□ 0.12
LIM2P55344 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.78■□□□□ 0.12
LIM2P55344 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
LIM2P55344 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
LIM2P55344 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.78■□□□□ 0.12
LIM2P55344 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIM2P55344 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.78■□□□□ 0.12
LIM2P55344 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIM2P55344 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.77■□□□□ 0.12
LIM2P55344 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIM2P55344 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIM2P55344 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIM2P55344 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.77■□□□□ 0.12
LIM2P55344 AL391005.1-201ENST00000623953 2435 ntBASIC15.77■□□□□ 0.12
LIM2P55344 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.77■□□□□ 0.12
LIM2P55344 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIM2P55344 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIM2P55344 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIM2P55344 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
LIM2P55344 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIM2P55344 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
LIM2P55344 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIM2P55344 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.12
LIM2P55344 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.77■□□□□ 0.12
LIM2P55344 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIM2P55344 AC140658.5-201ENST00000438532 169 ntBASIC15.77■□□□□ 0.12
LIM2P55344 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIM2P55344 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.77■□□□□ 0.12
LIM2P55344 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.77■□□□□ 0.12
LIM2P55344 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.77■□□□□ 0.12
LIM2P55344 AC002347.1-201ENST00000569543 541 ntBASIC15.77■□□□□ 0.12
LIM2P55344 MIR3909-201ENST00000579518 119 ntBASIC15.77■□□□□ 0.12
LIM2P55344 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.77■□□□□ 0.12
LIM2P55344 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIM2P55344 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms