Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC18.37■□□□□ 0.53
HTTP42858 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.37■□□□□ 0.53
HTTP42858 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC18.37■□□□□ 0.53
HTTP42858 PFN1P12-201ENST00000455938 534 ntBASIC18.37■□□□□ 0.53
HTTP42858 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC18.37■□□□□ 0.53
HTTP42858 SPCS2P2-201ENST00000603270 608 ntBASIC18.37■□□□□ 0.53
HTTP42858 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HTTP42858 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
HTTP42858 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HTTP42858 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HTTP42858 AC090164.3-201ENST00000610780 2143 ntBASIC18.36■□□□□ 0.53
HTTP42858 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HTTP42858 TPO-206ENST00000382269 1155 ntTSL 5 BASIC18.36■□□□□ 0.53
HTTP42858 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
HTTP42858 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC18.36■□□□□ 0.53
HTTP42858 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC18.36■□□□□ 0.53
HTTP42858 PFN2-215ENST00000497148 743 ntTSL 4 BASIC18.36■□□□□ 0.53
HTTP42858 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
HTTP42858 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.36■□□□□ 0.53
HTTP42858 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
HTTP42858 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC18.36■□□□□ 0.53
HTTP42858 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.36■□□□□ 0.53
HTTP42858 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.36■□□□□ 0.53
HTTP42858 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HTTP42858 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.36■□□□□ 0.53
HTTP42858 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HTTP42858 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HTTP42858 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HTTP42858 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.36■□□□□ 0.53
HTTP42858 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HTTP42858 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC18.36■□□□□ 0.53
HTTP42858 AL365330.1-201ENST00000607459 531 ntBASIC18.36■□□□□ 0.53
HTTP42858 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HTTP42858 AC128714.1-201ENST00000637035 887 ntBASIC18.36■□□□□ 0.53
HTTP42858 AC092053.1-201ENST00000605787 1936 ntBASIC18.36■□□□□ 0.53
HTTP42858 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HTTP42858 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HTTP42858 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
HTTP42858 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HTTP42858 HINT2P1-201ENST00000419438 481 ntBASIC18.36■□□□□ 0.53
HTTP42858 REEP1-202ENST00000453231 940 ntTSL 2 BASIC18.36■□□□□ 0.53
HTTP42858 AC068587.3-201ENST00000526613 355 ntBASIC18.36■□□□□ 0.53
HTTP42858 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC18.36■□□□□ 0.53
HTTP42858 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.36■□□□□ 0.53
HTTP42858 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.36■□□□□ 0.53
HTTP42858 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
HTTP42858 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HTTP42858 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HTTP42858 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.35■□□□□ 0.53
HTTP42858 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.35■□□□□ 0.53
HTTP42858 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
HTTP42858 ACTG1P3-201ENST00000431775 1114 ntBASIC18.35■□□□□ 0.53
HTTP42858 RN7SL399P-201ENST00000471648 279 ntBASIC18.35■□□□□ 0.53
HTTP42858 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.35■□□□□ 0.53
HTTP42858 FADS2-212ENST00000522639 360 ntTSL 5 BASIC18.35■□□□□ 0.53
HTTP42858 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.35■□□□□ 0.53
HTTP42858 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.35■□□□□ 0.53
HTTP42858 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC18.35■□□□□ 0.53
HTTP42858 FADS2-215ENST00000574708 385 ntTSL 3 BASIC18.35■□□□□ 0.53
HTTP42858 AC091271.1-201ENST00000611877 1162 ntBASIC18.35■□□□□ 0.53
HTTP42858 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.35■□□□□ 0.53
HTTP42858 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC18.35■□□□□ 0.53
HTTP42858 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC18.35■□□□□ 0.53
HTTP42858 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.35■□□□□ 0.53
HTTP42858 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.35■□□□□ 0.53
HTTP42858 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC18.35■□□□□ 0.53
HTTP42858 AL118558.3-201ENST00000607414 1079 ntBASIC18.35■□□□□ 0.53
HTTP42858 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC18.35■□□□□ 0.53
HTTP42858 AC138627.1-207ENST00000641560 1006 ntBASIC18.35■□□□□ 0.53
HTTP42858 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
HTTP42858 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.35■□□□□ 0.53
HTTP42858 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
HTTP42858 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HTTP42858 PCDHB17P-201ENST00000539533 2393 ntBASIC18.34■□□□□ 0.53
HTTP42858 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HTTP42858 RPL28-203ENST00000428193 573 ntTSL 2 BASIC18.34■□□□□ 0.53
HTTP42858 AL442647.2-201ENST00000429864 857 ntBASIC18.34■□□□□ 0.53
HTTP42858 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HTTP42858 AC093724.1-201ENST00000448659 1027 ntBASIC18.34■□□□□ 0.53
HTTP42858 LDHBP1-201ENST00000455730 1119 ntBASIC18.34■□□□□ 0.53
HTTP42858 FTH1P14-201ENST00000482930 551 ntBASIC18.34■□□□□ 0.53
HTTP42858 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HTTP42858 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.34■□□□□ 0.53
HTTP42858 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HTTP42858 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HTTP42858 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms