Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 BRI3BPP1-201ENST00000594224 787 ntBASIC27.35■■□□□ 1.97
CUX1P39880 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC27.35■■□□□ 1.97
CUX1P39880 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CUX1P39880 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX1P39880 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX1P39880 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CUX1P39880 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CUX1P39880 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX1P39880 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC27.34■■□□□ 1.97
CUX1P39880 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
CUX1P39880 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX1P39880 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
CUX1P39880 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
CUX1P39880 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC27.34■■□□□ 1.97
CUX1P39880 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CUX1P39880 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC27.34■■□□□ 1.97
CUX1P39880 AP002490.2-201ENST00000524791 560 ntBASIC27.34■■□□□ 1.97
CUX1P39880 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC27.34■■□□□ 1.97
CUX1P39880 AC124283.3-201ENST00000570869 594 ntBASIC27.34■■□□□ 1.97
CUX1P39880 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC27.34■■□□□ 1.97
CUX1P39880 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC27.34■■□□□ 1.97
CUX1P39880 ABBA01031660.1-201ENST00000635219 756 ntBASIC27.34■■□□□ 1.97
CUX1P39880 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC27.34■■□□□ 1.97
CUX1P39880 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX1P39880 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX1P39880 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC27.34■■□□□ 1.97
CUX1P39880 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CUX1P39880 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX1P39880 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CUX1P39880 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX1P39880 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC27.33■■□□□ 1.97
CUX1P39880 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC27.33■■□□□ 1.97
CUX1P39880 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX1P39880 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC27.33■■□□□ 1.97
CUX1P39880 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX1P39880 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX1P39880 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC27.33■■□□□ 1.97
CUX1P39880 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC27.33■■□□□ 1.97
CUX1P39880 USB1-202ENST00000423271 1217 ntTSL 2 BASIC27.33■■□□□ 1.97
CUX1P39880 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC27.33■■□□□ 1.97
CUX1P39880 CTBP2P5-201ENST00000454986 1264 ntBASIC27.33■■□□□ 1.97
CUX1P39880 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CUX1P39880 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CUX1P39880 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
CUX1P39880 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX1P39880 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC27.33■■□□□ 1.97
CUX1P39880 MIR6787-201ENST00000616675 61 ntBASIC27.33■■□□□ 1.97
CUX1P39880 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC27.33■■□□□ 1.97
CUX1P39880 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC27.33■■□□□ 1.97
CUX1P39880 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
CUX1P39880 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CUX1P39880 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
CUX1P39880 FO393414.2-201ENST00000405153 598 ntBASIC27.32■■□□□ 1.96
CUX1P39880 ACTBP11-201ENST00000436287 1126 ntBASIC27.32■■□□□ 1.96
CUX1P39880 AL355994.2-201ENST00000447882 704 ntBASIC27.32■■□□□ 1.96
CUX1P39880 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC27.32■■□□□ 1.96
CUX1P39880 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC27.32■■□□□ 1.96
CUX1P39880 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC27.32■■□□□ 1.96
CUX1P39880 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC27.32■■□□□ 1.96
CUX1P39880 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC27.32■■□□□ 1.96
CUX1P39880 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CUX1P39880 BTNL10-201ENST00000595971 695 ntBASIC27.32■■□□□ 1.96
CUX1P39880 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CUX1P39880 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC27.32■■□□□ 1.96
CUX1P39880 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CUX1P39880 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC27.32■■□□□ 1.96
CUX1P39880 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
CUX1P39880 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC27.32■■□□□ 1.96
CUX1P39880 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC27.32■■□□□ 1.96
CUX1P39880 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CUX1P39880 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC27.32■■□□□ 1.96
CUX1P39880 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
CUX1P39880 AC060834.1-201ENST00000443027 2032 ntBASIC27.32■■□□□ 1.96
CUX1P39880 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
CUX1P39880 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
CUX1P39880 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CUX1P39880 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC27.31■■□□□ 1.96
CUX1P39880 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
CUX1P39880 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC27.31■■□□□ 1.96
CUX1P39880 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC27.31■■□□□ 1.96
CUX1P39880 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CUX1P39880 AL162726.2-201ENST00000438986 1017 ntBASIC27.31■■□□□ 1.96
CUX1P39880 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC27.31■■□□□ 1.96
CUX1P39880 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC27.31■■□□□ 1.96
CUX1P39880 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC27.31■■□□□ 1.96
CUX1P39880 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC27.31■■□□□ 1.96
CUX1P39880 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC27.31■■□□□ 1.96
CUX1P39880 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC27.31■■□□□ 1.96
CUX1P39880 HNRNPA1P48-201ENST00000562726 1377 ntBASIC27.31■■□□□ 1.96
CUX1P39880 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC27.31■■□□□ 1.96
CUX1P39880 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC27.31■■□□□ 1.96
CUX1P39880 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC27.31■■□□□ 1.96
CUX1P39880 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC27.31■■□□□ 1.96
CUX1P39880 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC27.31■■□□□ 1.96
CUX1P39880 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CUX1P39880 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC27.31■■□□□ 1.96
CUX1P39880 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC27.31■■□□□ 1.96
CUX1P39880 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CUX1P39880 STX1A-203ENST00000395155 783 ntTSL 2 BASIC27.31■■□□□ 1.96
CUX1P39880 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms