Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 HINT2P1-201ENST00000419438 481 ntBASIC19.82■□□□□ 0.76
BRCA1P38398 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC19.82■□□□□ 0.76
BRCA1P38398 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
BRCA1P38398 CHMP4BP1-201ENST00000556017 588 ntBASIC19.82■□□□□ 0.76
BRCA1P38398 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC19.82■□□□□ 0.76
BRCA1P38398 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC19.82■□□□□ 0.76
BRCA1P38398 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.82■□□□□ 0.76
BRCA1P38398 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.82■□□□□ 0.76
BRCA1P38398 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.82■□□□□ 0.76
BRCA1P38398 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.82■□□□□ 0.76
BRCA1P38398 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 AL031731.1-201ENST00000642131 2094 ntBASIC19.82■□□□□ 0.76
BRCA1P38398 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
BRCA1P38398 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC19.82■□□□□ 0.76
BRCA1P38398 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
BRCA1P38398 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC19.82■□□□□ 0.76
BRCA1P38398 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 TOMM22P5-201ENST00000416399 439 ntBASIC19.82■□□□□ 0.76
BRCA1P38398 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC19.82■□□□□ 0.76
BRCA1P38398 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC19.82■□□□□ 0.76
BRCA1P38398 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
BRCA1P38398 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRCA1P38398 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19.82■□□□□ 0.76
BRCA1P38398 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
BRCA1P38398 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
BRCA1P38398 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BRCA1P38398 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.81■□□□□ 0.76
BRCA1P38398 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
BRCA1P38398 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BRCA1P38398 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.81■□□□□ 0.76
BRCA1P38398 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BRCA1P38398 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BRCA1P38398 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC19.81■□□□□ 0.76
BRCA1P38398 RPL13P2-201ENST00000440687 659 ntBASIC19.81■□□□□ 0.76
BRCA1P38398 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC19.81■□□□□ 0.76
BRCA1P38398 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
BRCA1P38398 HADH-212ENST00000638621 741 ntTSL 5 BASIC19.81■□□□□ 0.76
BRCA1P38398 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
BRCA1P38398 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
BRCA1P38398 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC19.8■□□□□ 0.76
BRCA1P38398 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC19.8■□□□□ 0.76
BRCA1P38398 MTX1P1-201ENST00000440904 838 ntBASIC19.8■□□□□ 0.76
BRCA1P38398 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19.8■□□□□ 0.76
BRCA1P38398 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC19.8■□□□□ 0.76
BRCA1P38398 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC19.8■□□□□ 0.76
BRCA1P38398 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
BRCA1P38398 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.8■□□□□ 0.76
BRCA1P38398 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 RERG-209ENST00000546331 1383 ntTSL 2 BASIC19.8■□□□□ 0.76
BRCA1P38398 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.8■□□□□ 0.76
BRCA1P38398 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.8■□□□□ 0.76
BRCA1P38398 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
BRCA1P38398 AL354751.1-201ENST00000412768 1863 ntBASIC19.8■□□□□ 0.76
BRCA1P38398 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRCA1P38398 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRCA1P38398 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
BRCA1P38398 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.79■□□□□ 0.76
BRCA1P38398 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC19.79■□□□□ 0.76
BRCA1P38398 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BRCA1P38398 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC19.79■□□□□ 0.76
BRCA1P38398 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BRCA1P38398 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
BRCA1P38398 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRCA1P38398 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRCA1P38398 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BRCA1P38398 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.79■□□□□ 0.76
BRCA1P38398 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
BRCA1P38398 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.79■□□□□ 0.76
BRCA1P38398 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.79■□□□□ 0.76
BRCA1P38398 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.79■□□□□ 0.76
BRCA1P38398 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.79■□□□□ 0.76
BRCA1P38398 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.79■□□□□ 0.76
BRCA1P38398 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRCA1P38398 REEP1-202ENST00000453231 940 ntTSL 2 BASIC19.79■□□□□ 0.76
BRCA1P38398 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC19.79■□□□□ 0.76
BRCA1P38398 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.79■□□□□ 0.76
BRCA1P38398 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.79■□□□□ 0.76
BRCA1P38398 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRCA1P38398 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.79■□□□□ 0.76
BRCA1P38398 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC19.79■□□□□ 0.76
BRCA1P38398 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.79■□□□□ 0.76
BRCA1P38398 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms