Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SCN4AP35499 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.28■□□□□ 0.68
SCN4AP35499 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
SCN4AP35499 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 AC134915.1-201ENST00000426461 574 ntBASIC19.28■□□□□ 0.68
SCN4AP35499 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC19.28■□□□□ 0.68
SCN4AP35499 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC19.28■□□□□ 0.68
SCN4AP35499 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC19.28■□□□□ 0.68
SCN4AP35499 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 AC005695.3-201ENST00000614522 232 ntBASIC19.28■□□□□ 0.68
SCN4AP35499 AL008638.5-201ENST00000623814 1298 ntBASIC19.28■□□□□ 0.68
SCN4AP35499 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 AL138781.2-201ENST00000617896 1843 ntBASIC19.28■□□□□ 0.68
SCN4AP35499 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SCN4AP35499 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SCN4AP35499 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SCN4AP35499 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SCN4AP35499 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SCN4AP35499 AZGP1P1-201ENST00000411909 902 ntBASIC19.28■□□□□ 0.68
SCN4AP35499 CNN2P8-201ENST00000421872 913 ntBASIC19.28■□□□□ 0.68
SCN4AP35499 ARTN-209ENST00000479128 471 ntTSL 3 BASIC19.28■□□□□ 0.68
SCN4AP35499 ENPP7P5-201ENST00000541031 1031 ntBASIC19.28■□□□□ 0.68
SCN4AP35499 AC120045.2-201ENST00000567334 178 ntBASIC19.28■□□□□ 0.68
SCN4AP35499 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SCN4AP35499 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC19.28■□□□□ 0.68
SCN4AP35499 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC19.28■□□□□ 0.68
SCN4AP35499 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN4AP35499 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SCN4AP35499 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.27■□□□□ 0.68
SCN4AP35499 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN4AP35499 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SCN4AP35499 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SCN4AP35499 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN4AP35499 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN4AP35499 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.27■□□□□ 0.68
SCN4AP35499 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN4AP35499 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN4AP35499 AL138688.1-201ENST00000624851 1594 ntBASIC19.27■□□□□ 0.68
SCN4AP35499 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SCN4AP35499 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SCN4AP35499 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SCN4AP35499 OLR1-203ENST00000432556 950 ntTSL 2 BASIC19.27■□□□□ 0.68
SCN4AP35499 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.27■□□□□ 0.68
SCN4AP35499 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC19.27■□□□□ 0.68
SCN4AP35499 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SCN4AP35499 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SCN4AP35499 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SCN4AP35499 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SCN4AP35499 RERG-209ENST00000546331 1383 ntTSL 2 BASIC19.27■□□□□ 0.67
SCN4AP35499 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.27■□□□□ 0.67
SCN4AP35499 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN4AP35499 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN4AP35499 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN4AP35499 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN4AP35499 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN4AP35499 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SCN4AP35499 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.26■□□□□ 0.67
SCN4AP35499 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN4AP35499 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC19.26■□□□□ 0.67
SCN4AP35499 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SCN4AP35499 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.26■□□□□ 0.67
SCN4AP35499 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC19.26■□□□□ 0.67
SCN4AP35499 RPL13AP25-201ENST00000484130 612 ntBASIC19.26■□□□□ 0.67
SCN4AP35499 SCARNA20.5-201ENST00000516991 142 ntBASIC19.26■□□□□ 0.67
SCN4AP35499 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SCN4AP35499 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC19.26■□□□□ 0.67
SCN4AP35499 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC19.26■□□□□ 0.67
SCN4AP35499 HCG18-245ENST00000602550 559 ntTSL 4 BASIC19.26■□□□□ 0.67
SCN4AP35499 AC091271.1-201ENST00000611877 1162 ntBASIC19.26■□□□□ 0.67
SCN4AP35499 SNX1-214ENST00000625244 324 ntTSL 5 BASIC19.26■□□□□ 0.67
SCN4AP35499 AL139011.1-202ENST00000642063 584 ntBASIC19.26■□□□□ 0.67
SCN4AP35499 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.26■□□□□ 0.67
SCN4AP35499 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN4AP35499 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN4AP35499 ABALON-201ENST00000629058 1903 ntBASIC19.26■□□□□ 0.67
SCN4AP35499 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.26■□□□□ 0.67
SCN4AP35499 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.26■□□□□ 0.67
SCN4AP35499 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN4AP35499 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.26■□□□□ 0.67
SCN4AP35499 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.26■□□□□ 0.67
SCN4AP35499 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.26■□□□□ 0.67
SCN4AP35499 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.26■□□□□ 0.67
SCN4AP35499 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC19.26■□□□□ 0.67
SCN4AP35499 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SCN4AP35499 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SCN4AP35499 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC19.25■□□□□ 0.67
SCN4AP35499 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.25■□□□□ 0.67
SCN4AP35499 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC19.25■□□□□ 0.67
SCN4AP35499 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.25■□□□□ 0.67
SCN4AP35499 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC19.25■□□□□ 0.67
SCN4AP35499 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms