Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCD3P28288 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.34■□□□□ 0.05
ABCD3P28288 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.34■□□□□ 0.05
ABCD3P28288 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.34■□□□□ 0.05
ABCD3P28288 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCD3P28288 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCD3P28288 AC018695.7-201ENST00000624587 2492 ntBASIC15.34■□□□□ 0.05
ABCD3P28288 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ABCD3P28288 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCD3P28288 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.34■□□□□ 0.05
ABCD3P28288 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.33■□□□□ 0.05
ABCD3P28288 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
ABCD3P28288 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
ABCD3P28288 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
ABCD3P28288 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.33■□□□□ 0.05
ABCD3P28288 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
ABCD3P28288 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
ABCD3P28288 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
ABCD3P28288 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCD3P28288 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.33■□□□□ 0.04
ABCD3P28288 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ABCD3P28288 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCD3P28288 YBX1P5-201ENST00000509441 847 ntBASIC15.33■□□□□ 0.04
ABCD3P28288 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCD3P28288 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCD3P28288 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.33■□□□□ 0.04
ABCD3P28288 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
ABCD3P28288 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCD3P28288 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.33■□□□□ 0.04
ABCD3P28288 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
ABCD3P28288 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.33■□□□□ 0.04
ABCD3P28288 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.33■□□□□ 0.04
ABCD3P28288 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCD3P28288 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.33■□□□□ 0.04
ABCD3P28288 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.33■□□□□ 0.04
ABCD3P28288 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCD3P28288 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.33■□□□□ 0.04
ABCD3P28288 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ABCD3P28288 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ABCD3P28288 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.33■□□□□ 0.04
ABCD3P28288 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.33■□□□□ 0.04
ABCD3P28288 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ABCD3P28288 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
ABCD3P28288 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ABCD3P28288 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
ABCD3P28288 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.33■□□□□ 0.04
ABCD3P28288 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
ABCD3P28288 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.33■□□□□ 0.04
ABCD3P28288 AL513477.1-201ENST00000602865 2407 ntBASIC15.33■□□□□ 0.04
ABCD3P28288 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
ABCD3P28288 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
ABCD3P28288 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
ABCD3P28288 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.32■□□□□ 0.04
ABCD3P28288 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.32■□□□□ 0.04
ABCD3P28288 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.32■□□□□ 0.04
ABCD3P28288 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.32■□□□□ 0.04
ABCD3P28288 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
ABCD3P28288 GGT4P-201ENST00000623672 1708 ntBASIC15.32■□□□□ 0.04
ABCD3P28288 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
ABCD3P28288 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 MIR1233-2-201ENST00000408138 82 ntBASIC15.32■□□□□ 0.04
ABCD3P28288 MIR1233-1-201ENST00000408722 82 ntBASIC15.32■□□□□ 0.04
ABCD3P28288 AL355306.1-201ENST00000415580 579 ntBASIC15.32■□□□□ 0.04
ABCD3P28288 CEND1P1-201ENST00000451006 455 ntBASIC15.32■□□□□ 0.04
ABCD3P28288 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.32■□□□□ 0.04
ABCD3P28288 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
ABCD3P28288 MIR4469-201ENST00000583919 79 ntBASIC15.32■□□□□ 0.04
ABCD3P28288 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
ABCD3P28288 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
ABCD3P28288 WASH6P-202ENST00000359512 1437 ntBASIC15.32■□□□□ 0.04
ABCD3P28288 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.32■□□□□ 0.04
ABCD3P28288 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.32■□□□□ 0.04
ABCD3P28288 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.32■□□□□ 0.04
ABCD3P28288 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.32■□□□□ 0.04
ABCD3P28288 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
ABCD3P28288 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.32■□□□□ 0.04
ABCD3P28288 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
ABCD3P28288 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
ABCD3P28288 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
ABCD3P28288 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
ABCD3P28288 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
ABCD3P28288 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCD3P28288 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCD3P28288 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms