Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A1P02462 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A1P02462 AC024267.1-201ENST00000582320 895 ntBASIC20.05■□□□□ 0.8
COL4A1P02462 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
COL4A1P02462 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC20.05■□□□□ 0.8
COL4A1P02462 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL4A1P02462 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
COL4A1P02462 AC025048.3-201ENST00000590609 569 ntBASIC20.05■□□□□ 0.8
COL4A1P02462 AC027307.3-201ENST00000594262 1100 ntBASIC20.05■□□□□ 0.8
COL4A1P02462 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A1P02462 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A1P02462 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL4A1P02462 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC20.05■□□□□ 0.8
COL4A1P02462 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A1P02462 AC005702.4-201ENST00000618393 416 ntBASIC20.05■□□□□ 0.8
COL4A1P02462 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A1P02462 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
COL4A1P02462 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A1P02462 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A1P02462 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A1P02462 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A1P02462 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A1P02462 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC20.05■□□□□ 0.8
COL4A1P02462 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A1P02462 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A1P02462 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A1P02462 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC20.04■□□□□ 0.8
COL4A1P02462 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A1P02462 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.04■□□□□ 0.8
COL4A1P02462 ATP5G2P4-201ENST00000442175 420 ntBASIC20.04■□□□□ 0.8
COL4A1P02462 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A1P02462 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A1P02462 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A1P02462 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A1P02462 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
COL4A1P02462 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A1P02462 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A1P02462 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
COL4A1P02462 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A1P02462 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A1P02462 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
COL4A1P02462 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
COL4A1P02462 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A1P02462 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 MIR1909-201ENST00000411312 80 ntBASIC20.03■□□□□ 0.8
COL4A1P02462 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A1P02462 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 IFT20-216ENST00000588477 774 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A1P02462 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A1P02462 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A1P02462 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A1P02462 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A1P02462 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A1P02462 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
COL4A1P02462 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
COL4A1P02462 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
COL4A1P02462 ACA64.2-201ENST00000459014 129 ntBASIC20.03■□□□□ 0.8
COL4A1P02462 PTK7-212ENST00000476760 902 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A1P02462 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.03■□□□□ 0.8
COL4A1P02462 AC055876.2-201ENST00000531834 546 ntBASIC20.03■□□□□ 0.8
COL4A1P02462 AC092337.1-201ENST00000568699 1129 ntBASIC20.03■□□□□ 0.8
COL4A1P02462 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A1P02462 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.03■□□□□ 0.8
COL4A1P02462 LINC01115-203ENST00000606068 577 ntBASIC20.03■□□□□ 0.8
COL4A1P02462 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC20.03■□□□□ 0.8
COL4A1P02462 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.03■□□□□ 0.8
COL4A1P02462 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
COL4A1P02462 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A1P02462 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
COL4A1P02462 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A1P02462 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A1P02462 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL4A1P02462 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A1P02462 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A1P02462 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A1P02462 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.02■□□□□ 0.8
COL4A1P02462 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
COL4A1P02462 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A1P02462 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.02■□□□□ 0.8
COL4A1P02462 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A1P02462 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A1P02462 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.02■□□□□ 0.8
COL4A1P02462 AL353779.1-201ENST00000434793 351 ntBASIC20.02■□□□□ 0.8
COL4A1P02462 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A1P02462 AC093004.1-201ENST00000508850 424 ntBASIC20.02■□□□□ 0.8
COL4A1P02462 AP002490.2-201ENST00000524791 560 ntBASIC20.02■□□□□ 0.8
COL4A1P02462 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.02■□□□□ 0.8
COL4A1P02462 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
COL4A1P02462 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A1P02462 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms