Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS4BO75351 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
VPS4BO75351 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS4BO75351 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS4BO75351 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS4BO75351 AC013467.2-201ENST00000605472 835 ntBASIC16.37■□□□□ 0.21
VPS4BO75351 AP001269.4-201ENST00000609611 512 ntBASIC16.37■□□□□ 0.21
VPS4BO75351 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 AL662844.4-201ENST00000606367 2838 ntBASIC16.37■□□□□ 0.21
VPS4BO75351 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS4BO75351 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.37■□□□□ 0.21
VPS4BO75351 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 SIGLEC16-201ENST00000599858 1437 ntBASIC16.36■□□□□ 0.21
VPS4BO75351 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
VPS4BO75351 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
VPS4BO75351 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
VPS4BO75351 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS4BO75351 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
VPS4BO75351 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS4BO75351 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
VPS4BO75351 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS4BO75351 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS4BO75351 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS4BO75351 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS4BO75351 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS4BO75351 AC021087.4-201ENST00000563761 564 ntBASIC16.36■□□□□ 0.21
VPS4BO75351 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS4BO75351 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.36■□□□□ 0.21
VPS4BO75351 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 ALOX12P2-203ENST00000570921 1945 ntBASIC16.36■□□□□ 0.21
VPS4BO75351 AC148477.5-201ENST00000625164 1645 ntBASIC16.36■□□□□ 0.21
VPS4BO75351 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
VPS4BO75351 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
VPS4BO75351 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
VPS4BO75351 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.36■□□□□ 0.21
VPS4BO75351 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS4BO75351 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
VPS4BO75351 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS4BO75351 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS4BO75351 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS4BO75351 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VPS4BO75351 PCDHA1-201ENST00000378133 2726 ntBASIC16.35■□□□□ 0.21
VPS4BO75351 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS4BO75351 AL162727.3-201ENST00000635661 2787 ntBASIC16.35■□□□□ 0.21
VPS4BO75351 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS4BO75351 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS4BO75351 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS4BO75351 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.35■□□□□ 0.21
VPS4BO75351 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS4BO75351 RNA5SP415-201ENST00000517246 115 ntBASIC16.35■□□□□ 0.21
VPS4BO75351 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VPS4BO75351 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
VPS4BO75351 AC002347.1-201ENST00000569543 541 ntBASIC16.35■□□□□ 0.21
VPS4BO75351 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS4BO75351 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VPS4BO75351 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS4BO75351 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.35■□□□□ 0.21
VPS4BO75351 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.35■□□□□ 0.21
VPS4BO75351 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 176.3 ms