Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.84■□□□□ 0.13
PROM1O43490 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
PROM1O43490 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
PROM1O43490 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
PROM1O43490 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.13
PROM1O43490 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PROM1O43490 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
PROM1O43490 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.83■□□□□ 0.12
PROM1O43490 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PROM1O43490 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
PROM1O43490 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.83■□□□□ 0.12
PROM1O43490 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PROM1O43490 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.83■□□□□ 0.12
PROM1O43490 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.83■□□□□ 0.12
PROM1O43490 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PROM1O43490 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
PROM1O43490 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.83■□□□□ 0.12
PROM1O43490 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.83■□□□□ 0.12
PROM1O43490 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
PROM1O43490 AC064836.3-201ENST00000607928 673 ntBASIC15.83■□□□□ 0.12
PROM1O43490 AC010507.1-201ENST00000633895 436 ntBASIC15.83■□□□□ 0.12
PROM1O43490 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PROM1O43490 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.83■□□□□ 0.12
PROM1O43490 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
PROM1O43490 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 AL512652.2-201ENST00000625156 1716 ntBASIC15.82■□□□□ 0.12
PROM1O43490 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.82■□□□□ 0.12
PROM1O43490 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.82■□□□□ 0.12
PROM1O43490 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
PROM1O43490 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.82■□□□□ 0.12
PROM1O43490 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.82■□□□□ 0.12
PROM1O43490 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
PROM1O43490 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.82■□□□□ 0.12
PROM1O43490 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.82■□□□□ 0.12
PROM1O43490 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.82■□□□□ 0.12
PROM1O43490 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.82■□□□□ 0.12
PROM1O43490 AL645728.2-201ENST00000641974 660 ntBASIC15.82■□□□□ 0.12
PROM1O43490 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.82■□□□□ 0.12
PROM1O43490 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.82■□□□□ 0.12
PROM1O43490 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PROM1O43490 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.81■□□□□ 0.12
PROM1O43490 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PROM1O43490 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
PROM1O43490 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PROM1O43490 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PROM1O43490 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PROM1O43490 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PROM1O43490 HMGA1P7-201ENST00000406908 502 ntBASIC15.81■□□□□ 0.12
PROM1O43490 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.81■□□□□ 0.12
PROM1O43490 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PROM1O43490 AC007967.2-201ENST00000432613 625 ntBASIC15.81■□□□□ 0.12
PROM1O43490 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PROM1O43490 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.81■□□□□ 0.12
PROM1O43490 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PROM1O43490 KRT18P2-201ENST00000447938 1258 ntBASIC15.81■□□□□ 0.12
PROM1O43490 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.81■□□□□ 0.12
PROM1O43490 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.81■□□□□ 0.12
PROM1O43490 AL031432.2-201ENST00000566714 459 ntBASIC15.81■□□□□ 0.12
PROM1O43490 AL928711.1-201ENST00000570165 459 ntBASIC15.81■□□□□ 0.12
PROM1O43490 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.81■□□□□ 0.12
PROM1O43490 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PROM1O43490 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PROM1O43490 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.81■□□□□ 0.12
PROM1O43490 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PROM1O43490 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PROM1O43490 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
PROM1O43490 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PROM1O43490 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PROM1O43490 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PROM1O43490 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PROM1O43490 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PROM1O43490 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PROM1O43490 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PROM1O43490 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PROM1O43490 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PROM1O43490 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PROM1O43490 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PROM1O43490 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.8■□□□□ 0.12
PROM1O43490 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms