Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HIF3AQ9Y2N7 PCDH8P1-201ENST00000428983 2773 ntBASIC15.07■□□□□ 0
HIF3AQ9Y2N7 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.07■□□□□ 0
HIF3AQ9Y2N7 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HIF3AQ9Y2N7 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HIF3AQ9Y2N7 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 AC018712.1-201ENST00000455767 687 ntBASIC15.06■□□□□ 0
HIF3AQ9Y2N7 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 IGHV3-65-201ENST00000523210 341 ntBASIC15.06■□□□□ 0
HIF3AQ9Y2N7 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 MIR1199-201ENST00000621445 119 ntBASIC15.06■□□□□ 0
HIF3AQ9Y2N7 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 AC005052.1-201ENST00000625181 2492 ntBASIC15.06■□□□□ 0
HIF3AQ9Y2N7 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
HIF3AQ9Y2N7 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.05■□□□□ 0
HIF3AQ9Y2N7 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
HIF3AQ9Y2N7 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.05■□□□□ 0
HIF3AQ9Y2N7 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
HIF3AQ9Y2N7 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.05■□□□□ 0
HIF3AQ9Y2N7 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ 0
HIF3AQ9Y2N7 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
HIF3AQ9Y2N7 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
HIF3AQ9Y2N7 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
HIF3AQ9Y2N7 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.05■□□□□ 0
HIF3AQ9Y2N7 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 HCG4-201ENST00000418983 998 ntBASIC15.05■□□□□ -0
HIF3AQ9Y2N7 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 AC087641.1-201ENST00000557561 1021 ntBASIC15.05■□□□□ -0
HIF3AQ9Y2N7 AL121912.1-201ENST00000603683 238 ntBASIC15.05■□□□□ -0
HIF3AQ9Y2N7 TP73-AS1-207ENST00000624167 988 ntBASIC15.05■□□□□ -0
HIF3AQ9Y2N7 AP001350.2-201ENST00000625104 1094 ntBASIC15.05■□□□□ -0
HIF3AQ9Y2N7 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 PGM5P2-202ENST00000637225 1043 ntBASIC15.05■□□□□ -0
HIF3AQ9Y2N7 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
HIF3AQ9Y2N7 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms