Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 SLC25A6P2-201ENST00000497974 877 ntBASIC16.45■□□□□ 0.22
MKS1Q9NXB0 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 AC107918.2-201ENST00000530817 355 ntBASIC16.45■□□□□ 0.22
MKS1Q9NXB0 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 AC099336.1-202ENST00000602961 463 ntBASIC16.45■□□□□ 0.22
MKS1Q9NXB0 AL591684.3-201ENST00000605187 298 ntBASIC16.45■□□□□ 0.22
MKS1Q9NXB0 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 AL592424.1-201ENST00000563624 1536 ntBASIC16.45■□□□□ 0.22
MKS1Q9NXB0 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MKS1Q9NXB0 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 NUS1P2-201ENST00000417358 873 ntBASIC16.44■□□□□ 0.22
MKS1Q9NXB0 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MKS1Q9NXB0 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 AC006058.4-201ENST00000624016 1670 ntBASIC16.43■□□□□ 0.22
MKS1Q9NXB0 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 RBM17P3-201ENST00000417687 1192 ntBASIC16.43■□□□□ 0.22
MKS1Q9NXB0 TMPOP1-202ENST00000424642 1267 ntBASIC16.43■□□□□ 0.22
MKS1Q9NXB0 AP000867.3-201ENST00000524675 377 ntBASIC16.43■□□□□ 0.22
MKS1Q9NXB0 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.43■□□□□ 0.22
MKS1Q9NXB0 AC087641.1-201ENST00000557561 1021 ntBASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms