Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VTA1Q9NP79 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VTA1Q9NP79 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VTA1Q9NP79 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VTA1Q9NP79 AC018470.1-201ENST00000624790 3129 ntBASIC18.5■□□□□ 0.55
VTA1Q9NP79 BTBD7P1-201ENST00000447253 1453 ntBASIC18.5■□□□□ 0.55
VTA1Q9NP79 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VTA1Q9NP79 AL645728.1-201ENST00000366221 2101 ntBASIC18.5■□□□□ 0.55
VTA1Q9NP79 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VTA1Q9NP79 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VTA1Q9NP79 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
VTA1Q9NP79 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 GK-202ENST00000378941 458 ntTSL 3 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 NME2P1-201ENST00000426182 414 ntBASIC18.49■□□□□ 0.55
VTA1Q9NP79 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 AC004840.1-201ENST00000636359 365 ntBASIC18.49■□□□□ 0.55
VTA1Q9NP79 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
VTA1Q9NP79 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 GPAA1P2-202ENST00000606848 1787 ntBASIC18.49■□□□□ 0.55
VTA1Q9NP79 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VTA1Q9NP79 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.49■□□□□ 0.55
VTA1Q9NP79 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
VTA1Q9NP79 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 AC141586.5-201ENST00000624546 2050 ntBASIC18.48■□□□□ 0.55
VTA1Q9NP79 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VTA1Q9NP79 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.48■□□□□ 0.55
VTA1Q9NP79 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.48■□□□□ 0.55
VTA1Q9NP79 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 COX5BP8-201ENST00000416911 349 ntBASIC18.48■□□□□ 0.55
VTA1Q9NP79 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.48■□□□□ 0.55
VTA1Q9NP79 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.48■□□□□ 0.55
VTA1Q9NP79 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.48■□□□□ 0.55
VTA1Q9NP79 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
VTA1Q9NP79 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.48■□□□□ 0.55
VTA1Q9NP79 AC061975.2-201ENST00000581722 295 ntBASIC18.48■□□□□ 0.55
VTA1Q9NP79 AC026979.3-201ENST00000607315 403 ntBASIC18.48■□□□□ 0.55
VTA1Q9NP79 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.48■□□□□ 0.55
VTA1Q9NP79 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.48■□□□□ 0.55
VTA1Q9NP79 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.48■□□□□ 0.55
VTA1Q9NP79 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.48■□□□□ 0.55
VTA1Q9NP79 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.48■□□□□ 0.55
VTA1Q9NP79 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VTA1Q9NP79 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms