Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 KRT8P39-201ENST00000396270 1433 ntBASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 GOLGA2P4-201ENST00000441462 777 ntBASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 AC104596.2-201ENST00000512793 793 ntBASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 AC103810.3-201ENST00000583567 96 ntBASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC19.68■□□□□ 0.74
ZNF541Q9H0D2 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 APOC3-202ENST00000375345 604 ntTSL 5 BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 RNA5SP412-201ENST00000516234 123 ntBASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 ABBA01031660.1-201ENST00000635219 756 ntBASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 AL139099.5-201ENST00000635274 300 ntBASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
ZNF541Q9H0D2 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 ZNF767P-206ENST00000513792 565 ntBASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
ZNF541Q9H0D2 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 AC135050.7-201ENST00000624508 2218 ntBASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms