Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.06■□□□□ 0.64
USP28Q96RU2 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC19.06■□□□□ 0.64
USP28Q96RU2 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.06■□□□□ 0.64
USP28Q96RU2 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.06■□□□□ 0.64
USP28Q96RU2 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
USP28Q96RU2 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
USP28Q96RU2 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.06■□□□□ 0.64
USP28Q96RU2 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.06■□□□□ 0.64
USP28Q96RU2 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.05■□□□□ 0.64
USP28Q96RU2 REXO1L8P-201ENST00000604378 1897 ntBASIC19.05■□□□□ 0.64
USP28Q96RU2 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.05■□□□□ 0.64
USP28Q96RU2 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.05■□□□□ 0.64
USP28Q96RU2 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
USP28Q96RU2 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
USP28Q96RU2 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.05■□□□□ 0.64
USP28Q96RU2 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.05■□□□□ 0.64
USP28Q96RU2 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.05■□□□□ 0.64
USP28Q96RU2 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.05■□□□□ 0.64
USP28Q96RU2 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.05■□□□□ 0.64
USP28Q96RU2 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.05■□□□□ 0.64
USP28Q96RU2 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.05■□□□□ 0.64
USP28Q96RU2 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
USP28Q96RU2 AL603832.2-201ENST00000566195 2125 ntBASIC19.05■□□□□ 0.64
USP28Q96RU2 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
USP28Q96RU2 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 AC010491.1-201ENST00000563101 2797 ntBASIC19.05■□□□□ 0.64
USP28Q96RU2 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
USP28Q96RU2 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.05■□□□□ 0.64
USP28Q96RU2 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
USP28Q96RU2 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC19.05■□□□□ 0.64
USP28Q96RU2 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC19.05■□□□□ 0.64
USP28Q96RU2 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
USP28Q96RU2 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP28Q96RU2 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
USP28Q96RU2 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.05■□□□□ 0.64
USP28Q96RU2 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP28Q96RU2 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP28Q96RU2 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
USP28Q96RU2 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP28Q96RU2 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.04■□□□□ 0.64
USP28Q96RU2 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.04■□□□□ 0.64
USP28Q96RU2 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP28Q96RU2 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP28Q96RU2 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
USP28Q96RU2 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
USP28Q96RU2 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP28Q96RU2 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP28Q96RU2 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
USP28Q96RU2 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.04■□□□□ 0.64
USP28Q96RU2 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP28Q96RU2 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP28Q96RU2 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
USP28Q96RU2 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.04■□□□□ 0.64
USP28Q96RU2 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.04■□□□□ 0.64
USP28Q96RU2 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.04■□□□□ 0.64
USP28Q96RU2 AC105339.3-201ENST00000560043 636 ntBASIC19.04■□□□□ 0.64
USP28Q96RU2 AL121912.1-201ENST00000603683 238 ntBASIC19.04■□□□□ 0.64
USP28Q96RU2 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.04■□□□□ 0.64
USP28Q96RU2 AC010654.1-201ENST00000615722 808 ntBASIC19.04■□□□□ 0.64
USP28Q96RU2 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.04■□□□□ 0.64
USP28Q96RU2 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP28Q96RU2 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP28Q96RU2 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC19.04■□□□□ 0.64
USP28Q96RU2 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP28Q96RU2 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
USP28Q96RU2 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
USP28Q96RU2 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC19.03■□□□□ 0.64
USP28Q96RU2 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.03■□□□□ 0.64
USP28Q96RU2 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP28Q96RU2 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms