Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 PFN1P12-201ENST00000455938 534 ntBASIC16.22■□□□□ 0.19
VPS13AQ96RL7 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 CYP2A7P1-201ENST00000595391 815 ntBASIC16.22■□□□□ 0.19
VPS13AQ96RL7 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AL365330.1-201ENST00000607459 531 ntBASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AC138627.1-207ENST00000641560 1006 ntBASIC16.22■□□□□ 0.19
VPS13AQ96RL7 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 AL162726.2-201ENST00000438986 1017 ntBASIC16.21■□□□□ 0.19
VPS13AQ96RL7 TMEM198B-204ENST00000484016 896 ntBASIC16.21■□□□□ 0.19
VPS13AQ96RL7 SDHAP3-202ENST00000515467 728 ntBASIC16.21■□□□□ 0.19
VPS13AQ96RL7 RNA5SP410-201ENST00000516285 106 ntBASIC16.21■□□□□ 0.19
VPS13AQ96RL7 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 AL118558.3-201ENST00000607414 1079 ntBASIC16.21■□□□□ 0.19
VPS13AQ96RL7 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.21■□□□□ 0.19
VPS13AQ96RL7 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 MIR5572-201ENST00000583188 137 ntBASIC16.21■□□□□ 0.19
VPS13AQ96RL7 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS13AQ96RL7 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
VPS13AQ96RL7 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VPS13AQ96RL7 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 RN7SL769P-201ENST00000469386 295 ntBASIC16.2■□□□□ 0.18
VPS13AQ96RL7 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 NUS1P3-201ENST00000423502 862 ntBASIC16.2■□□□□ 0.18
VPS13AQ96RL7 AP001889.1-201ENST00000525414 633 ntBASIC16.2■□□□□ 0.18
VPS13AQ96RL7 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 AC091271.1-201ENST00000611877 1162 ntBASIC16.2■□□□□ 0.18
VPS13AQ96RL7 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 AC061975.2-201ENST00000581722 295 ntBASIC16.2■□□□□ 0.18
VPS13AQ96RL7 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
VPS13AQ96RL7 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13AQ96RL7 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms