Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 AC106730.1-201ENST00000566722 1090 ntBASIC16.04■□□□□ 0.16
VMP1Q96GC9 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 AC006449.5-201ENST00000610658 2098 ntBASIC16.04■□□□□ 0.16
VMP1Q96GC9 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 AC104109.2-201ENST00000602919 1418 ntBASIC16.03■□□□□ 0.16
VMP1Q96GC9 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 AP002414.1-201ENST00000391405 1147 ntBASIC16.03■□□□□ 0.16
VMP1Q96GC9 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.03■□□□□ 0.16
VMP1Q96GC9 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VMP1Q96GC9 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VMP1Q96GC9 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.02■□□□□ 0.16
VMP1Q96GC9 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VMP1Q96GC9 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
VMP1Q96GC9 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VMP1Q96GC9 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.02■□□□□ 0.16
VMP1Q96GC9 AL590787.1-201ENST00000568856 1315 ntBASIC16.02■□□□□ 0.16
VMP1Q96GC9 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VMP1Q96GC9 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VMP1Q96GC9 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VMP1Q96GC9 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.02■□□□□ 0.16
VMP1Q96GC9 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VMP1Q96GC9 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VMP1Q96GC9 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
VMP1Q96GC9 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.02■□□□□ 0.16
VMP1Q96GC9 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VMP1Q96GC9 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VMP1Q96GC9 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.02■□□□□ 0.16
VMP1Q96GC9 AC108751.1-201ENST00000490852 363 ntBASIC16.02■□□□□ 0.16
VMP1Q96GC9 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
VMP1Q96GC9 AC008667.4-201ENST00000607370 168 ntBASIC16.02■□□□□ 0.16
VMP1Q96GC9 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
VMP1Q96GC9 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
VMP1Q96GC9 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.02■□□□□ 0.15
VMP1Q96GC9 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VMP1Q96GC9 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.02■□□□□ 0.15
VMP1Q96GC9 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VMP1Q96GC9 CYP2T1P-202ENST00000641596 2535 ntBASIC16.02■□□□□ 0.15
VMP1Q96GC9 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
VMP1Q96GC9 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
VMP1Q96GC9 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.02■□□□□ 0.15
VMP1Q96GC9 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.02■□□□□ 0.15
VMP1Q96GC9 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VMP1Q96GC9 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VMP1Q96GC9 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VMP1Q96GC9 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VMP1Q96GC9 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VMP1Q96GC9 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 AC105917.1-201ENST00000506637 2539 ntBASIC16.01■□□□□ 0.15
VMP1Q96GC9 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms