Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 AL121772.3-201ENST00000610840 674 ntBASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ATG4AQ8WYN0 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 AC105917.1-201ENST00000506637 2539 ntBASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 MIR1224-201ENST00000408193 85 ntBASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 REXO1L6P-202ENST00000619970 1078 ntBASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 KRT8P39-201ENST00000396270 1433 ntBASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ATG4AQ8WYN0 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 AC107918.2-201ENST00000530817 355 ntBASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 AC021087.4-201ENST00000563761 564 ntBASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATG4AQ8WYN0 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms