Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 NUS1P3-201ENST00000423502 862 ntBASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 ACTG1P3-201ENST00000431775 1114 ntBASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 AP000812.2-201ENST00000538934 718 ntBASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 RARRES2P5-201ENST00000564013 466 ntBASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 AL022328.3-201ENST00000607943 679 ntBASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
SMC1BQ8NDV3 NEFHP1-201ENST00000412845 2629 ntBASIC19.58■□□□□ 0.73
SMC1BQ8NDV3 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC19.58■□□□□ 0.73
SMC1BQ8NDV3 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SMC1BQ8NDV3 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMC1BQ8NDV3 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMC1BQ8NDV3 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMC1BQ8NDV3 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.73
SMC1BQ8NDV3 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.58■□□□□ 0.73
SMC1BQ8NDV3 IMPDH1P4-201ENST00000445028 1534 ntBASIC19.58■□□□□ 0.73
SMC1BQ8NDV3 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC19.58■□□□□ 0.73
SMC1BQ8NDV3 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SMC1BQ8NDV3 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 AL162726.2-201ENST00000438986 1017 ntBASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 TDH-203ENST00000531764 1110 ntBASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 RN7SL560P-201ENST00000577943 264 ntBASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 CYP2A7P1-201ENST00000595391 815 ntBASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 MIR6069-201ENST00000620069 79 ntBASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SMC1BQ8NDV3 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 BCRP2-202ENST00000447763 634 ntBASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 BCRP6-201ENST00000510112 632 ntBASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 BCRP7-201ENST00000511549 544 ntBASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 NEU3-202ENST00000526068 431 ntTSL 2 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 AC009542.2-202ENST00000619004 1067 ntBASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 DEK-201ENST00000244776 1441 ntTSL 2 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 KRT8P22-201ENST00000562317 1415 ntBASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SMC1BQ8NDV3 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms