Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 AL139010.1-201ENST00000454878 894 ntBASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 AC134043.2-201ENST00000624206 2238 ntBASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.72■□□□□ 0.43
CNKSR3Q6P9H4 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 AC234783.1-201ENST00000441761 496 ntBASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 AC007389.4-201ENST00000454674 793 ntBASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 RRP7BP-205ENST00000566851 833 ntBASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 AL390961.4-201ENST00000623958 2535 ntBASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 CROCCP2-202ENST00000412962 2773 ntBASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CNKSR3Q6P9H4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CNKSR3Q6P9H4 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CNKSR3Q6P9H4 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
CNKSR3Q6P9H4 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.71■□□□□ 0.42
CNKSR3Q6P9H4 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.71■□□□□ 0.42
CNKSR3Q6P9H4 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CNKSR3Q6P9H4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.71■□□□□ 0.42
CNKSR3Q6P9H4 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 NOC2LP1-202ENST00000452600 2235 ntBASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 AC098850.1-201ENST00000419919 790 ntBASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 TMEM14DP-201ENST00000422205 345 ntBASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.7■□□□□ 0.42
CNKSR3Q6P9H4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms