Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 BTNL10-201ENST00000595971 695 ntBASIC20.69■□□□□ 0.9
RC3H1Q5TC82 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC20.69■□□□□ 0.9
RC3H1Q5TC82 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC20.69■□□□□ 0.9
RC3H1Q5TC82 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RC3H1Q5TC82 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
RC3H1Q5TC82 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RC3H1Q5TC82 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RC3H1Q5TC82 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
RC3H1Q5TC82 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RC3H1Q5TC82 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RC3H1Q5TC82 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.69■□□□□ 0.9
RC3H1Q5TC82 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RC3H1Q5TC82 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 GALT-202ENST00000450095 1280 ntTSL 2 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 CROCCP4-201ENST00000457096 498 ntBASIC20.68■□□□□ 0.9
RC3H1Q5TC82 AC104989.1-201ENST00000519711 778 ntBASIC20.68■□□□□ 0.9
RC3H1Q5TC82 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 AL390961.4-201ENST00000623958 2535 ntBASIC20.68■□□□□ 0.9
RC3H1Q5TC82 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 RELA-227ENST00000615805 2236 ntTSL 5 BASIC20.68■□□□□ 0.9
RC3H1Q5TC82 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 FAM86MP-201ENST00000340703 885 ntBASIC20.67■□□□□ 0.9
RC3H1Q5TC82 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 USP32P1-208ENST00000506594 1164 ntBASIC20.67■□□□□ 0.9
RC3H1Q5TC82 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 MIR4525-201ENST00000580000 75 ntBASIC20.67■□□□□ 0.9
RC3H1Q5TC82 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.67■□□□□ 0.9
RC3H1Q5TC82 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 AC104596.2-201ENST00000512793 793 ntBASIC20.66■□□□□ 0.9
RC3H1Q5TC82 PAM16-204ENST00000571941 674 ntTSL 3 BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 AL391069.4-201ENST00000609583 481 ntBASIC20.66■□□□□ 0.9
RC3H1Q5TC82 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 CLK3P2-201ENST00000427566 1453 ntBASIC20.66■□□□□ 0.9
RC3H1Q5TC82 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 AL031731.1-201ENST00000642131 2094 ntBASIC20.66■□□□□ 0.9
RC3H1Q5TC82 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC20.66■□□□□ 0.9
RC3H1Q5TC82 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
RC3H1Q5TC82 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms