Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PDLIM3Q53GG5 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
PDLIM3Q53GG5 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.92□□□□□ -0.18
PDLIM3Q53GG5 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PDLIM3Q53GG5 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 PCDH8P1-201ENST00000428983 2773 ntBASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 AC046158.3-201ENST00000624947 2558 ntBASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 AL161772.1-201ENST00000610494 4412 ntBASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 EGFEM1P-202ENST00000431685 1563 ntBASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 AC078925.2-201ENST00000624013 1973 ntBASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC13.91□□□□□ -0.18
PDLIM3Q53GG5 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 PNMT-202ENST00000394246 821 ntTSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 AC007967.3-201ENST00000434308 558 ntBASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 MINOS1P3-201ENST00000457048 203 ntBASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 AC005332.3-201ENST00000589904 676 ntBASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 AL591684.3-201ENST00000605187 298 ntBASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC13.9□□□□□ -0.18
PDLIM3Q53GG5 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms