Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 PI4KAP1-204ENST00000612579 1703 ntBASIC19.29■□□□□ 0.68
SF3A1Q15459 LINC02199-201ENST00000506655 2702 ntBASIC19.29■□□□□ 0.68
SF3A1Q15459 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
SF3A1Q15459 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SF3A1Q15459 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
SF3A1Q15459 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.29■□□□□ 0.68
SF3A1Q15459 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.29■□□□□ 0.68
SF3A1Q15459 AC087163.2-201ENST00000457299 853 ntBASIC19.29■□□□□ 0.68
SF3A1Q15459 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.29■□□□□ 0.68
SF3A1Q15459 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
SF3A1Q15459 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.29■□□□□ 0.68
SF3A1Q15459 AC013467.2-201ENST00000605472 835 ntBASIC19.29■□□□□ 0.68
SF3A1Q15459 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SF3A1Q15459 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.29■□□□□ 0.68
SF3A1Q15459 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.29■□□□□ 0.68
SF3A1Q15459 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SF3A1Q15459 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SF3A1Q15459 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SF3A1Q15459 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.28■□□□□ 0.68
SF3A1Q15459 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SF3A1Q15459 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SF3A1Q15459 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.28■□□□□ 0.68
SF3A1Q15459 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SF3A1Q15459 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.28■□□□□ 0.68
SF3A1Q15459 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.28■□□□□ 0.68
SF3A1Q15459 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.28■□□□□ 0.68
SF3A1Q15459 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SF3A1Q15459 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.28■□□□□ 0.68
SF3A1Q15459 AC107918.4-202ENST00000641623 219 ntBASIC19.28■□□□□ 0.68
SF3A1Q15459 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
SF3A1Q15459 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SF3A1Q15459 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
SF3A1Q15459 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SF3A1Q15459 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 AC002310.6-201ENST00000624451 1377 ntBASIC19.28■□□□□ 0.68
SF3A1Q15459 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.28■□□□□ 0.68
SF3A1Q15459 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SF3A1Q15459 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SF3A1Q15459 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
SF3A1Q15459 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.27■□□□□ 0.68
SF3A1Q15459 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SF3A1Q15459 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 AC008894.3-201ENST00000624324 3103 ntBASIC19.27■□□□□ 0.68
SF3A1Q15459 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 AC026691.1-201ENST00000602502 2017 ntBASIC19.27■□□□□ 0.68
SF3A1Q15459 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.27■□□□□ 0.68
SF3A1Q15459 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.27■□□□□ 0.68
SF3A1Q15459 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.27■□□□□ 0.68
SF3A1Q15459 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SF3A1Q15459 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
SF3A1Q15459 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SF3A1Q15459 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.27■□□□□ 0.68
SF3A1Q15459 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.27■□□□□ 0.68
SF3A1Q15459 LAGE3P1-201ENST00000425356 484 ntBASIC19.27■□□□□ 0.68
SF3A1Q15459 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.27■□□□□ 0.68
SF3A1Q15459 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.27■□□□□ 0.68
SF3A1Q15459 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
SF3A1Q15459 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SF3A1Q15459 REXO1L3P-201ENST00000622202 1288 ntBASIC19.27■□□□□ 0.68
SF3A1Q15459 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC19.27■□□□□ 0.68
SF3A1Q15459 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.27■□□□□ 0.68
SF3A1Q15459 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SF3A1Q15459 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SF3A1Q15459 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC19.27■□□□□ 0.67
SF3A1Q15459 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.27■□□□□ 0.67
SF3A1Q15459 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.27■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms