Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.81■□□□□ 0.6
CCNA1P78396 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.81■□□□□ 0.6
CCNA1P78396 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
CCNA1P78396 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CCNA1P78396 U91328.1-201ENST00000437528 223 ntBASIC18.81■□□□□ 0.6
CCNA1P78396 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.81■□□□□ 0.6
CCNA1P78396 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18.81■□□□□ 0.6
CCNA1P78396 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCNA1P78396 AP002490.2-201ENST00000524791 560 ntBASIC18.81■□□□□ 0.6
CCNA1P78396 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.81■□□□□ 0.6
CCNA1P78396 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 AL139011.1-202ENST00000642063 584 ntBASIC18.81■□□□□ 0.6
CCNA1P78396 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.81■□□□□ 0.6
CCNA1P78396 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.81■□□□□ 0.6
CCNA1P78396 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CCNA1P78396 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCNA1P78396 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 CROCCP2-202ENST00000412962 2773 ntBASIC18.8■□□□□ 0.6
CCNA1P78396 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 SPDYE19P-201ENST00000338590 713 ntBASIC18.8■□□□□ 0.6
CCNA1P78396 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CCNA1P78396 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CCNA1P78396 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 RN7SL752P-201ENST00000463779 287 ntBASIC18.8■□□□□ 0.6
CCNA1P78396 GIMAP3P-201ENST00000495150 836 ntBASIC18.8■□□□□ 0.6
CCNA1P78396 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 AC010336.2-201ENST00000564226 506 ntBASIC18.8■□□□□ 0.6
CCNA1P78396 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 AC020765.3-201ENST00000613051 740 ntBASIC18.8■□□□□ 0.6
CCNA1P78396 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC18.8■□□□□ 0.6
CCNA1P78396 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.8■□□□□ 0.6
CCNA1P78396 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.8■□□□□ 0.6
CCNA1P78396 SNX33P1-201ENST00000592116 1762 ntBASIC18.8■□□□□ 0.6
CCNA1P78396 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCNA1P78396 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CCNA1P78396 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCNA1P78396 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.79■□□□□ 0.6
CCNA1P78396 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
CCNA1P78396 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.79■□□□□ 0.6
CCNA1P78396 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.79■□□□□ 0.6
CCNA1P78396 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
CCNA1P78396 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.79■□□□□ 0.6
CCNA1P78396 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCNA1P78396 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.79■□□□□ 0.6
CCNA1P78396 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.79■□□□□ 0.6
CCNA1P78396 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CCNA1P78396 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 DGCR5-201ENST00000399539 862 ntBASIC18.79■□□□□ 0.6
CCNA1P78396 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCNA1P78396 AC093724.1-201ENST00000448659 1027 ntBASIC18.79■□□□□ 0.6
CCNA1P78396 IGHV3-71-201ENST00000523324 359 ntBASIC18.79■□□□□ 0.6
CCNA1P78396 AL512361.1-201ENST00000554200 418 ntBASIC18.79■□□□□ 0.6
CCNA1P78396 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.79■□□□□ 0.6
CCNA1P78396 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.79■□□□□ 0.6
CCNA1P78396 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.79■□□□□ 0.6
CCNA1P78396 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.79■□□□□ 0.6
CCNA1P78396 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CCNA1P78396 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCNA1P78396 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCNA1P78396 AC092053.1-201ENST00000605787 1936 ntBASIC18.78■□□□□ 0.6
CCNA1P78396 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms