Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.82■□□□□ 0.12
LIM2P55344 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.82■□□□□ 0.12
LIM2P55344 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIM2P55344 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.82■□□□□ 0.12
LIM2P55344 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LIM2P55344 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIM2P55344 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIM2P55344 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIM2P55344 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIM2P55344 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIM2P55344 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIM2P55344 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIM2P55344 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.81■□□□□ 0.12
LIM2P55344 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LIM2P55344 AC023274.1-201ENST00000418278 595 ntBASIC15.81■□□□□ 0.12
LIM2P55344 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 PMS2P7-201ENST00000506558 1336 ntBASIC15.81■□□□□ 0.12
LIM2P55344 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.81■□□□□ 0.12
LIM2P55344 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.81■□□□□ 0.12
LIM2P55344 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LIM2P55344 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.81■□□□□ 0.12
LIM2P55344 AC040169.1-201ENST00000565382 521 ntBASIC15.81■□□□□ 0.12
LIM2P55344 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.81■□□□□ 0.12
LIM2P55344 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIM2P55344 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.81■□□□□ 0.12
LIM2P55344 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LIM2P55344 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.8■□□□□ 0.12
LIM2P55344 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
LIM2P55344 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.8■□□□□ 0.12
LIM2P55344 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.8■□□□□ 0.12
LIM2P55344 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
LIM2P55344 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.8■□□□□ 0.12
LIM2P55344 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
LIM2P55344 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.8■□□□□ 0.12
LIM2P55344 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.8■□□□□ 0.12
LIM2P55344 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.8■□□□□ 0.12
LIM2P55344 RNU1-129P-201ENST00000384064 167 ntBASIC15.8■□□□□ 0.12
LIM2P55344 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.8■□□□□ 0.12
LIM2P55344 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.8■□□□□ 0.12
LIM2P55344 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.8■□□□□ 0.12
LIM2P55344 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.8■□□□□ 0.12
LIM2P55344 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 AC074386.1-202ENST00000463561 864 ntBASIC15.8■□□□□ 0.12
LIM2P55344 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.8■□□□□ 0.12
LIM2P55344 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.8■□□□□ 0.12
LIM2P55344 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.8■□□□□ 0.12
LIM2P55344 U1.21-201ENST00000580816 167 ntBASIC15.8■□□□□ 0.12
LIM2P55344 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.8■□□□□ 0.12
LIM2P55344 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.8■□□□□ 0.12
LIM2P55344 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.8■□□□□ 0.12
LIM2P55344 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIM2P55344 AL512652.2-201ENST00000625156 1716 ntBASIC15.8■□□□□ 0.12
LIM2P55344 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.79■□□□□ 0.12
LIM2P55344 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
LIM2P55344 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
LIM2P55344 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.79■□□□□ 0.12
LIM2P55344 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
LIM2P55344 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.79■□□□□ 0.12
LIM2P55344 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.79■□□□□ 0.12
LIM2P55344 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIM2P55344 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms