Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CTCFP49711 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CTCFP49711 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.19■□□□□ 0.66
CTCFP49711 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC19.19■□□□□ 0.66
CTCFP49711 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.19■□□□□ 0.66
CTCFP49711 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC19.19■□□□□ 0.66
CTCFP49711 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.19■□□□□ 0.66
CTCFP49711 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.19■□□□□ 0.66
CTCFP49711 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CTCFP49711 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CTCFP49711 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.18■□□□□ 0.66
CTCFP49711 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CTCFP49711 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.18■□□□□ 0.66
CTCFP49711 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTCFP49711 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTCFP49711 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CTCFP49711 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
CTCFP49711 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.18■□□□□ 0.66
CTCFP49711 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC19.18■□□□□ 0.66
CTCFP49711 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC19.18■□□□□ 0.66
CTCFP49711 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC19.18■□□□□ 0.66
CTCFP49711 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC19.18■□□□□ 0.66
CTCFP49711 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.18■□□□□ 0.66
CTCFP49711 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.18■□□□□ 0.66
CTCFP49711 AC091271.1-201ENST00000611877 1162 ntBASIC19.18■□□□□ 0.66
CTCFP49711 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTCFP49711 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.18■□□□□ 0.66
CTCFP49711 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC19.18■□□□□ 0.66
CTCFP49711 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CTCFP49711 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTCFP49711 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTCFP49711 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CTCFP49711 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CTCFP49711 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.18■□□□□ 0.66
CTCFP49711 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC19.18■□□□□ 0.66
CTCFP49711 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.17■□□□□ 0.66
CTCFP49711 NOC2LP2-201ENST00000407594 1944 ntBASIC19.17■□□□□ 0.66
CTCFP49711 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC19.17■□□□□ 0.66
CTCFP49711 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.17■□□□□ 0.66
CTCFP49711 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.17■□□□□ 0.66
CTCFP49711 PHGDH-209ENST00000641074 1780 ntBASIC19.17■□□□□ 0.66
CTCFP49711 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CTCFP49711 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
CTCFP49711 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.17■□□□□ 0.66
CTCFP49711 AC009949.1-201ENST00000623048 1830 ntBASIC19.17■□□□□ 0.66
CTCFP49711 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC19.17■□□□□ 0.66
CTCFP49711 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CTCFP49711 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC19.17■□□□□ 0.66
CTCFP49711 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CTCFP49711 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC19.17■□□□□ 0.66
CTCFP49711 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC19.17■□□□□ 0.66
CTCFP49711 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC19.17■□□□□ 0.66
CTCFP49711 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.17■□□□□ 0.66
CTCFP49711 AC128714.1-201ENST00000637035 887 ntBASIC19.17■□□□□ 0.66
CTCFP49711 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.17■□□□□ 0.66
CTCFP49711 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC19.17■□□□□ 0.66
CTCFP49711 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CTCFP49711 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CTCFP49711 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CTCFP49711 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CTCFP49711 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CTCFP49711 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CTCFP49711 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CTCFP49711 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC19.16■□□□□ 0.66
CTCFP49711 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.16■□□□□ 0.66
CTCFP49711 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CTCFP49711 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CTCFP49711 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC19.16■□□□□ 0.66
CTCFP49711 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CTCFP49711 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.16■□□□□ 0.66
CTCFP49711 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
CTCFP49711 RPS2P36-201ENST00000456516 831 ntBASIC19.16■□□□□ 0.66
CTCFP49711 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC19.16■□□□□ 0.66
CTCFP49711 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC19.16■□□□□ 0.66
CTCFP49711 NEU3-202ENST00000526068 431 ntTSL 2 BASIC19.16■□□□□ 0.66
CTCFP49711 AP001258.2-201ENST00000529891 490 ntBASIC19.16■□□□□ 0.66
CTCFP49711 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC19.16■□□□□ 0.66
CTCFP49711 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CTCFP49711 BANF1P1-201ENST00000553684 263 ntBASIC19.16■□□□□ 0.66
CTCFP49711 AC010328.2-201ENST00000597698 1111 ntBASIC19.16■□□□□ 0.66
CTCFP49711 AL022328.1-201ENST00000610050 478 ntBASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms