Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.28■□□□□ 0.04
RFC3P40938 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.28■□□□□ 0.04
RFC3P40938 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.28■□□□□ 0.04
RFC3P40938 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.28■□□□□ 0.04
RFC3P40938 LINC00628-201ENST00000628516 1289 ntBASIC15.28■□□□□ 0.04
RFC3P40938 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.28■□□□□ 0.04
RFC3P40938 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.28■□□□□ 0.04
RFC3P40938 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
RFC3P40938 LINC02012-201ENST00000608206 1725 ntBASIC15.28■□□□□ 0.04
RFC3P40938 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.28■□□□□ 0.04
RFC3P40938 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 NFIC-211ENST00000641145 8399 ntBASIC15.28■□□□□ 0.04
RFC3P40938 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFC3P40938 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
RFC3P40938 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.27■□□□□ 0.04
RFC3P40938 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.27■□□□□ 0.04
RFC3P40938 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 AL021920.2-201ENST00000624828 1351 ntBASIC15.27■□□□□ 0.04
RFC3P40938 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.27■□□□□ 0.04
RFC3P40938 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.27■□□□□ 0.04
RFC3P40938 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.27■□□□□ 0.04
RFC3P40938 HCG4-201ENST00000418983 998 ntBASIC15.27■□□□□ 0.04
RFC3P40938 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFC3P40938 AC087641.1-201ENST00000557561 1021 ntBASIC15.27■□□□□ 0.04
RFC3P40938 AC091167.2-201ENST00000579581 588 ntBASIC15.27■□□□□ 0.04
RFC3P40938 MPDU1-223ENST00000582151 728 ntBASIC15.27■□□□□ 0.04
RFC3P40938 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.27■□□□□ 0.04
RFC3P40938 AL031055.1-201ENST00000606362 631 ntBASIC15.27■□□□□ 0.04
RFC3P40938 AC093512.1-201ENST00000617969 520 ntBASIC15.27■□□□□ 0.04
RFC3P40938 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFC3P40938 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFC3P40938 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.27■□□□□ 0.03
RFC3P40938 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RFC3P40938 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.27■□□□□ 0.03
RFC3P40938 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.27■□□□□ 0.03
RFC3P40938 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.27■□□□□ 0.03
RFC3P40938 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.27■□□□□ 0.03
RFC3P40938 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.27■□□□□ 0.03
RFC3P40938 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.27■□□□□ 0.03
RFC3P40938 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RFC3P40938 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFC3P40938 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFC3P40938 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RFC3P40938 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
RFC3P40938 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 KRT8P49-201ENST00000604166 1432 ntBASIC15.26■□□□□ 0.03
RFC3P40938 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.26■□□□□ 0.03
RFC3P40938 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.26■□□□□ 0.03
RFC3P40938 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.26■□□□□ 0.03
RFC3P40938 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
RFC3P40938 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
RFC3P40938 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 RNU1-129P-201ENST00000384064 167 ntBASIC15.26■□□□□ 0.03
RFC3P40938 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.26■□□□□ 0.03
RFC3P40938 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.26■□□□□ 0.03
RFC3P40938 KRT18P32-201ENST00000424695 1287 ntBASIC15.26■□□□□ 0.03
RFC3P40938 RN7SL589P-201ENST00000481268 310 ntBASIC15.26■□□□□ 0.03
RFC3P40938 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
RFC3P40938 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.26■□□□□ 0.03
RFC3P40938 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.26■□□□□ 0.03
RFC3P40938 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RFC3P40938 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.26■□□□□ 0.03
RFC3P40938 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.26■□□□□ 0.03
RFC3P40938 U1.21-201ENST00000580816 167 ntBASIC15.26■□□□□ 0.03
RFC3P40938 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.26■□□□□ 0.03
RFC3P40938 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 AL161645.1-201ENST00000622716 1255 ntBASIC15.26■□□□□ 0.03
RFC3P40938 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RFC3P40938 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFC3P40938 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms