Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PTPN4P29074 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.81■□□□□ 0.28
PTPN4P29074 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
PTPN4P29074 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.81■□□□□ 0.28
PTPN4P29074 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PTPN4P29074 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
PTPN4P29074 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.81■□□□□ 0.28
PTPN4P29074 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN4P29074 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.8■□□□□ 0.28
PTPN4P29074 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.8■□□□□ 0.28
PTPN4P29074 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.8■□□□□ 0.28
PTPN4P29074 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PTPN4P29074 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 HNRNPDP1-201ENST00000439535 754 ntBASIC16.8■□□□□ 0.28
PTPN4P29074 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 AC106730.1-201ENST00000566722 1090 ntBASIC16.8■□□□□ 0.28
PTPN4P29074 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.8■□□□□ 0.28
PTPN4P29074 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.8■□□□□ 0.28
PTPN4P29074 AL049840.3-201ENST00000602669 611 ntBASIC16.8■□□□□ 0.28
PTPN4P29074 MIR7706-201ENST00000613747 67 ntBASIC16.8■□□□□ 0.28
PTPN4P29074 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.8■□□□□ 0.28
PTPN4P29074 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.8■□□□□ 0.28
PTPN4P29074 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.8■□□□□ 0.28
PTPN4P29074 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 MTHFR-217ENST00000641820 1569 ntBASIC16.8■□□□□ 0.28
PTPN4P29074 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
PTPN4P29074 HLA-A-202ENST00000376806 1854 ntBASIC16.8■□□□□ 0.28
PTPN4P29074 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN4P29074 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
PTPN4P29074 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
PTPN4P29074 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
PTPN4P29074 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PTPN4P29074 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.79■□□□□ 0.28
PTPN4P29074 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 RPL13AP23-201ENST00000480739 586 ntBASIC16.79■□□□□ 0.28
PTPN4P29074 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN4P29074 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.79■□□□□ 0.28
PTPN4P29074 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PTPN4P29074 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
PTPN4P29074 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms